U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    gtf3c4 general transcription factor IIIC, polypeptide 4 [ Danio rerio (zebrafish) ]

    Gene ID: 568510, updated on 27-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    gtf3c4provided by ZNC
    Official Full Name
    general transcription factor IIIC, polypeptide 4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041008-147
    See related
    Ensembl:ENSDARG00000069538 AllianceGenome:ZFIN:ZDB-GENE-041008-147
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7138272; si:dkeyp-10e10.3
    Summary
    Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C4 (general transcription factor IIIC subunit 4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (17413611..17424790, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (17376852..17388164, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene TSC complex subunit 1b Neighboring gene BarH-like homeobox 1b Neighboring gene stomatin Neighboring gene gelsolin a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and expression of mangrove rivulus (Kryptolebias marmoratus) histone deacetylase (HDAC) and lysine acetyltransferase (KAT) genes. Fellous A, et al. Gene, 2019 Apr 5. PMID 30615915
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    acts_upstream_of_or_within transcription initiation at RNA polymerase III promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of transcription factor TFIIIC complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of transcription factor TFIIIC complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    general transcription factor 3C polypeptide 4
    XP_021329082.1
    XP_696935.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      17413611..17424790 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_691843.8 → XP_696935.1  general transcription factor 3C polypeptide 4

      UniProtKB/TrEMBL
      A0A8N7TDX7
      Related
      ENSDARP00000092069.4, ENSDART00000101295.5
      Conserved Domains (2) summary
      pfam12657
      Location:48 → 234
      TFIIIC_delta; Transcription factor IIIC subunit delta N-term
      pfam12660
      Location:693 → 765
      zf-TFIIIC; Putative zinc-finger of transcription factor IIIC complex

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395085.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      118807..129905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473407.1 → XP_021329082.1  general transcription factor 3C polypeptide 4

      UniProtKB/TrEMBL
      A0A2R8RJ69, A0A8M9PDB1
      Conserved Domains (2) summary
      pfam12657
      Location:48 → 234
      TFIIIC_delta; Transcription factor IIIC subunit delta N-term
      pfam12660
      Location:693 → 765
      zf-TFIIIC; Putative zinc-finger of transcription factor IIIC complex
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous