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    syf2 SYF2 pre-mRNA-splicing factor [ Danio rerio (zebrafish) ]

    Gene ID: 445043, updated on 26-Jun-2015
    Official Symbol
    syf2provided by ZNC
    Official Full Name
    SYF2 pre-mRNA-splicing factorprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040801-170
    See related
    Ensembl:ENSDARG00000004706; Vega:OTTDARG00000022895
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zeh0031; zgc:92835; hm:zeh0031; zgc:113871
    Orthologs
    See syf2 in MapViewer
    Location:
    chromosome: 13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current GRCz10 (GCF_000002035.5) 13 NC_007124.6 (45294791..45306104)
    103 previous assembly Zv9 (GCF_000002035.4) 13 NC_007124.5 (46051883..46063196)

    Chromosome 13 - NC_007124.6Genomic Context describing neighboring genes Neighboring gene runt-related transcription factor 3 Neighboring gene si:ch211-168h21.3 Neighboring gene zgc:158387 Neighboring gene arginine/serine-rich protein 1

    • Spliceosome, organism-specific biosystem (from KEGG)
      Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
    • Spliceosome, conserved biosystem (from KEGG)
      Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
    • Spliceosome, 35S U5-snRNP, organism-specific biosystem (from KEGG)
      Spliceosome, 35S U5-snRNP, organism-specific biosystemStructural complex; Genetic information processing; Spliceosome
    • Spliceosome, 35S U5-snRNP, conserved biosystem (from KEGG)
      Spliceosome, 35S U5-snRNP, conserved biosystemStructural complex; Genetic information processing; Spliceosome

    Markers

    Homology

    Clone Names

    • MGC113871

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    pre-mRNA-splicing factor syf2
    Names
    pre-mRNA-splicing factor syf2
    SYF2 homolog, RNA splicing factor

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003437.2NP_001003437.1  pre-mRNA-splicing factor syf2

      See identical proteins and their annotated locations for NP_001003437.1

      Status: PROVISIONAL

      Source sequence(s)
      BC076298
      UniProtKB/Swiss-Prot
      Q6DGP2
      Related
      ENSDARP00000090723, OTTDARP00000024240, ENSDART00000099950, OTTDART00000029703
      Conserved Domains (1) summary
      pfam08231
      Location:85233
      SYF2; SYF2 splicing factor

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007124.6 Reference GRCz10 Primary Assembly

      Range
      45294791..45306104
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)