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    Btbd6 BTB (POZ) domain containing 6 [ Mus musculus (house mouse) ]

    Gene ID: 399566, updated on 26-Jun-2015
    Official Symbol
    Btbd6provided by MGI
    Official Full Name
    BTB (POZ) domain containing 6provided by MGI
    Primary source
    MGI:MGI:3026623
    See related
    Ensembl:ENSMUSG00000002803
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    See Btbd6 in Epigenomics, MapViewer
    Location:
    12; 12 F1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 12 NC_000078.6 (112974998..112979493)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (114214693..114217151)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 14 Neighboring gene predicted gene, 26583 Neighboring gene BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) Neighboring gene phosphofurin acidic cluster sorting protein 2 Neighboring gene testis expressed gene 22

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    BTB/POZ domain-containing protein 6
    Names
    BTB/POZ domain-containing protein 6

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145900.1NP_001139372.1  BTB/POZ domain-containing protein 6 isoform 2

      See identical proteins and their annotated locations for NP_001139372.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region and uses a downstream translational start codon, compared to variant 1. The encoded isoform (2) is shorter at the N-terminus, compared to isoform 1.
      Source sequence(s)
      AA870939, AI118479, AI119004, AK146991
      Consensus CDS
      CCDS49194.1
      UniProtKB/Swiss-Prot
      Q8K2J9
      Related
      ENSMUSP00000127286, ENSMUST00000165079
      Conserved Domains (3) summary
      pfam08005
      Location:342487
      PHR; PHR domain
      smart00875
      Location:192298
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:79186
      BTB; BTB/POZ domain
    2. NM_201646.2NP_964008.2  BTB/POZ domain-containing protein 6 isoform 1

      See identical proteins and their annotated locations for NP_964008.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AA870939, AI118479, AK146991, BY337984
      Consensus CDS
      CCDS49193.1
      UniProtKB/TrEMBL
      G5E817
      UniProtKB/Swiss-Prot
      Q8K2J9
      Related
      ENSMUSP00000002880, ENSMUST00000002880
      Conserved Domains (3) summary
      pfam08005
      Location:393538
      PHR; PHR domain
      smart00875
      Location:243349
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:130237
      BTB; BTB/POZ domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p3 C57BL/6J

      Range
      112974998..112979493
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516056.2XP_006516119.1  

      See identical proteins and their annotated locations for XP_006516119.1

      UniProtKB/Swiss-Prot
      Q8K2J9
      Conserved Domains (3) summary
      pfam08005
      Location:342487
      PHR; PHR domain
      smart00875
      Location:192298
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:79186
      BTB; BTB/POZ domain
    2. XM_006516057.1XP_006516120.1  

      Conserved Domains (3) summary
      pfam08005
      Location:225370
      PHR; PHR domain
      smart00225
      Location:169
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00875
      Location:75181
      BACK; BTB And C-terminal Kelch

    Alternate Mm_Celera

    Genomic

    1. AC_000034.1 Alternate Mm_Celera

      Range
      114186511..114188971
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)