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    tshz1 teashirt zinc finger homeobox 1 [ Danio rerio (zebrafish) ]

    Gene ID: 369196, updated on 26-Jun-2015
    Official Symbol
    tshz1provided by ZNC
    Official Full Name
    teashirt zinc finger homeobox 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030820-3
    See related
    Ensembl:ENSDARG00000005026
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    tsh1; tsrt; tshz1a; sdccag33
    Orthologs
    See tshz1 in MapViewer
    Location:
    chromosome: 19
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current GRCz10 (GCF_000002035.5) 19 NC_007130.6 (21783121..21829237)
    103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (21847381..21895857)

    Chromosome 19 - NC_007130.6Genomic Context describing neighboring genes Neighboring gene thioredoxin-like 4A Neighboring gene CNDP dipeptidase 2 (metallopeptidase M20 family) Neighboring gene zinc finger protein 516 Neighboring gene myelin basic protein a

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    multicellular organismal development IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    teashirt homolog 1
    Names
    teashirt homolog 1
    serologically defined colon cancer antigen 33
    teashirt family zinc finger 1
    teashirt-like zinc finger protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001042746.1NP_001036211.1  teashirt homolog 1 precursor

      See identical proteins and their annotated locations for NP_001036211.1

      Status: VALIDATED

      Source sequence(s)
      BX470238
      UniProtKB/Swiss-Prot
      B3DJM5
      Conserved Domains (2) summary
      cd00086
      Location:9641032
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      sd00020
      Location:290312
      ZF_C2H2; Zn binding site [ion binding]

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007130.6 Reference GRCz10 Primary Assembly

      Range
      21783121..21829237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009294201.1XP_009292476.1  

      UniProtKB/TrEMBL
      F6NU84
      Related
      ENSDARP00000023365, ENSDART00000024639
      Conserved Domains (1) summary
      cd00086
      Location:9451013
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.