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    rag2 recombination activating gene 2 [ Danio rerio (zebrafish) ]

    Gene ID: 30658, updated on 26-Jun-2015
    Official Symbol
    rag2provided by ZNC
    Official Full Name
    recombination activating gene 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-990415-235
    See related
    Ensembl:ENSDARG00000052121; Vega:OTTDARG00000022572
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    rag-2; zgc:136743
    Orthologs
    See rag2 in MapViewer
    Location:
    chromosome: 25
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current GRCz10 (GCF_000002035.5) 25 NC_007136.6 (8933357..8936822, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 25 NC_007136.5 (9238694..9242159, complement)

    Chromosome 25 - NC_007136.6Genomic Context describing neighboring genes Neighboring gene si:ch211-256a21.4 Neighboring gene im:7145024 Neighboring gene recombination activating gene 1 Neighboring gene uncharacterized LOC103909817 Neighboring gene uncharacterized LOC103909818

    • FoxO signaling pathway, organism-specific biosystem (from KEGG)
      FoxO signaling pathway, organism-specific biosystemThe forkhead box O (FOXO) family of transcription factors regulates the expression of genes in cellular physiological events including apoptosis, cell-cycle control, glucose metabolism, oxidative str...

    Markers

    Homology

    Clone Names

    • MGC136743

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    chromatin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    methylated histone binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    phosphatidylinositol-3,4,5-trisphosphate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    phosphatidylinositol-3,4-bisphosphate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    phosphatidylinositol-3,5-bisphosphate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    phosphatidylinositol-4,5-bisphosphate binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    zinc ion binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    B cell differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    DNA recombination IEA
    Inferred from Electronic Annotation
    more info
     
    T cell differentiation in thymus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    V(D)J recombination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    chromatin modification IEA
    Inferred from Electronic Annotation
    more info
     
    hematopoietic or lymphoid organ development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    lymphocyte differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    thymus development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    V(D)J recombination-activating protein 2
    Names
    V(D)J recombination-activating protein 2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_131385.2NP_571460.2  V(D)J recombination-activating protein 2

      See identical proteins and their annotated locations for NP_571460.2

      Status: PROVISIONAL

      Source sequence(s)
      BC115249
      UniProtKB/TrEMBL
      Q1RLW7
      Related
      ENSDARP00000068402, OTTDARP00000023789, ENSDART00000073912, OTTDART00000029105
      Conserved Domains (2) summary
      pfam13341
      Location:414492
      RAG2_PHD; RAG2 PHD domain
      pfam03089
      Location:51387
      RAG2; Recombination activating protein 2

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007136.6 Reference GRCz10 Primary Assembly

      Range
      8933357..8936822
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)