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    Cdh20 cadherin 20 [ Mus musculus (house mouse) ]

    Gene ID: 23836, updated on 26-Jun-2015
    Official Symbol
    Cdh20provided by MGI
    Official Full Name
    cadherin 20provided by MGI
    Primary source
    MGI:MGI:1346069
    See related
    Ensembl:ENSMUSG00000050840; Vega:OTTMUSG00000025409
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cdh7
    Orthologs
    See Cdh20 in Epigenomics, MapViewer
    Location:
    1 E2.1; 1 49.42 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 1 NC_000067.6 (104768819..104995481)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (106665396..106892058)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41924 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene phosphatidylinositol transfer protein, cytoplasmic 1 pseudogene Neighboring gene predicted gene, 41925 Neighboring gene predicted gene 29012 Neighboring gene ring finger protein 152 Neighboring gene predicted gene, 17634

    Markers

    Homology

    Clone Names

    • MGC141415

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    cadherin-20
    Names
    cadherin-20
    cadherin 7
    cadherin-7

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011800.4NP_035930.1  cadherin-20 precursor

      See identical proteins and their annotated locations for NP_035930.1

      Status: PROVISIONAL

      Source sequence(s)
      AC101970, AC124447, AC158931
      Consensus CDS
      CCDS15203.1
      UniProtKB/Swiss-Prot
      Q9Z0M3
      Related
      ENSMUSP00000052078, OTTMUSP00000030861, ENSMUST00000062528, OTTMUST00000062566
      Conserved Domains (2) summary
      cd11304
      Location:394490
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam01049
      Location:643792
      Cadherin_C; Cadherin cytoplasmic region

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p3 C57BL/6J

      Range
      104768819..104995481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Mm_Celera

    Genomic

    1. AC_000023.1 Alternate Mm_Celera

      Range
      107630046..107857575
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)