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    K09A9.6 K09A9.6 [ Caenorhabditis elegans ]

    Gene ID: 181645, updated on 27-Jun-2015
    Gene symbol
    K09A9.6
    Gene description
    K09A9.6
    Locus tag
    CELE_K09A9.6
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    See K09A9.6 in MapViewer
    Location:
    chromosome: X
    Exon count:
    16
    Sequence:
    Chromosome: X; NC_003284.9 (15577656..15586748)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene DYN-1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene GAS-1 Neighboring gene ncRNA

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Names
    K09A9.6
    NP_001123163.1
    • Partially confirmed by transcript evidence;
      contains similarity to Pfam domains PF05118 (Aspartyl/Asparaginyl beta-hydroxylase) , PF13181 (Tetratricopeptide repeat) contains similarity to Interpro domains IPR007803 (Arginine/Asparagine/Proline hydroxylase), IPR011990 (Tetratricopeptide-like helical), IPR019734 (Tetratricopeptide repeat)
    NP_001123164.1
    • Partially confirmed by transcript evidence;
      contains similarity to Pfam domains PF05118 (Aspartyl/Asparaginyl beta-hydroxylase) , PF13181 (Tetratricopeptide repeat) contains similarity to Interpro domains IPR007803 (Arginine/Asparagine/Proline hydroxylase), IPR011990 (Tetratricopeptide-like helical), IPR019734 (Tetratricopeptide repeat)
    NP_510568.1
    • Confirmed by transcript evidence;
      contains similarity to Pfam domains PF05118 (Aspartyl/Asparaginyl beta-hydroxylase) , PF13181 (Tetratricopeptide repeat) contains similarity to Interpro domains IPR007803 (Arginine/Asparagine/Proline hydroxylase), IPR011990 (Tetratricopeptide-like helical), IPR019734 (Tetratricopeptide repeat)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      15577656..15586748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_078167.4NP_510568.1  K09A9.6, isoform a [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510568.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G5EEF4
      Conserved Domains (3) summary
      pfam13432
      Location:455522
      TPR_16; Tetratricopeptide repeat
      sd00006
      Location:572648
      TPR; putative protein binding surface [polypeptide binding]
      cl21464
      Location:703860
      cupin_like; Conserved domain found in cupin and related proteins
    2. NM_001129691.2NP_001123163.1  K09A9.6, isoform b [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001123163.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8WHT8
      Conserved Domains (3) summary
      cd00189
      Location:501580
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
      pfam13432
      Location:503570
      TPR_16; Tetratricopeptide repeat
      cl21464
      Location:751908
      ABD; Alpha-Mannosidase Binding Domain of Atg19/34
    3. NM_001129692.1NP_001123164.1  K09A9.6, isoform c [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001123164.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8WHT9
      Conserved Domains (3) summary
      cd00189
      Location:462541
      TPR; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, ...
      pfam13432
      Location:464531
      TPR_16; Tetratricopeptide repeat
      cl21464
      Location:712869
      ABD; Alpha-Mannosidase Binding Domain of Atg19/34