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    rnp-2 RNP-2 [ Caenorhabditis elegans ]

    Gene ID: 177181, updated on 23-Jun-2015
    Gene symbol
    rnp-2
    Gene description
    RNP-2
    Locus tag
    CELE_K08D10.4
    Gene type
    protein coding
    RNA name
    RNP-2
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    See rnp-2 in MapViewer
    Location:
    chromosome: IV
    Exon count:
    4
    Sequence:
    Chromosome: IV; NC_003282.8 (4172108..4173898)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene K08D10.18 Neighboring gene K08D10.5 Neighboring gene K08D10.13 Neighboring gene RNP-3 Neighboring gene DNJ-15

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    snRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    RNA interference IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryo development ending in birth or egg hatching IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    germ cell development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of meiotic nuclear division IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Names
    RNP-2
    NP_500504.1
    • Confirmed by transcript evidence;
      C. elegans RNP-2 protein; contains similarity to Pfam domain PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) contains similarity to Interpro domains IPR012677 (Nucleotide-binding, alpha-beta plait), IPR000504 (RNA recognition motif domain)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      4172108..4173898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_068103.3NP_500504.1  RNP-2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_500504.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q21322
      Conserved Domains (3) summary
      smart00360
      Location:982
      RRM; RNA recognition motif
      cd12246
      Location:986
      RRM1_U1A_like; RNA recognition motif 1 in the U1A/U2B"/SNF protein family
      cd12247
      Location:130201
      RRM2_U1A_like; RNA recognition motif 2 in the U1A/U2B"/SNF protein family