Display Settings:

Format

Send to:

Choose Destination
    • Showing Current items.

    Slc39a7 solute carrier family 39 (zinc transporter), member 7 [ Mus musculus (house mouse) ]

    Gene ID: 14977, updated on 26-Jun-2015
    Official Symbol
    Slc39a7provided by MGI
    Official Full Name
    solute carrier family 39 (zinc transporter), member 7provided by MGI
    Primary source
    MGI:MGI:95909
    See related
    Ensembl:ENSMUSG00000024327; Vega:OTTMUSG00000035430
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ke4; Ke-4; Zip7; Ring5; H-2Ke4; H2-Ke4; AA408174; AI117660; AL024048
    Orthologs
    See Slc39a7 in Epigenomics, MapViewer
    Location:
    17 B1; 17 17.98 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 17 NC_000083.6 (34028266..34031690, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (34165211..34168635, complement)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene microRNA 219a-1 Neighboring gene microRNA 219c Neighboring gene H2-K region expressed gene 6 Neighboring gene retinoid X receptor beta Neighboring gene collagen, type XI, alpha 2

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Markers

    Potential readthrough

    Included gene: H2-Ke6

    Homology

    Clone Names

    • MGC143814, MGC143815

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    metal ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    transport IEA
    Inferred from Electronic Annotation
    more info
     
    zinc II ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    zinc transporter SLC39A7
    Names
    zinc transporter SLC39A7
    H2-K region expressed gene 4
    histidine-rich membrane protein Ke4
    solute carrier family 39 member 7
    zrt-, Irt-like protein 7

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077709.1NP_001071177.1  zinc transporter SLC39A7 precursor

      See identical proteins and their annotated locations for NP_001071177.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AA170090, AK159968, AK167344, BY288782
      Consensus CDS
      CCDS37576.1
      UniProtKB/TrEMBL
      A0A068BIT0
      UniProtKB/Swiss-Prot
      Q31125
      Related
      ENSMUSP00000130102, ENSMUST00000169397
      Conserved Domains (1) summary
      pfam02535
      Location:140452
      Zip; ZIP Zinc transporter
    2. NM_008202.2NP_032228.2  zinc transporter SLC39A7 precursor

      See identical proteins and their annotated locations for NP_032228.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      AA170090, AK159968, AK167344, BY288782
      Consensus CDS
      CCDS37576.1
      UniProtKB/TrEMBL
      A0A068BIT0
      UniProtKB/Swiss-Prot
      Q31125
      Related
      ENSMUSP00000025186, OTTMUSP00000049736, ENSMUST00000025186, OTTMUST00000090595
      Conserved Domains (1) summary
      pfam02535
      Location:140452
      Zip; ZIP Zinc transporter

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p3 C57BL/6J

      Range
      34028266..34031690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p3 129X1/SvJ

    Genomic

    1. NT_039662.3 Reference GRCm38.p3 129X1/SvJ

      Range
      277204..280628
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p3 NOD/MrkTac

    Genomic

    1. NT_187027.1 Reference GRCm38.p3 NOD/MrkTac

      Range
      338710..342135
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCm38.p3 NOD/ShiLtJ

    Genomic

    1. NT_187004.1 Reference GRCm38.p3 NOD/ShiLtJ

      Range
      338822..342247
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Mm_Celera

    Genomic

    1. AC_000039.1 Alternate Mm_Celera

      Range
      36774396..36777820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)