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    CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough [ Homo sapiens (human) ]

    Gene ID: 100526761, updated on 26-Jun-2015
    Official Symbol
    CCDC169-SOHLH2provided by HGNC
    Official Full Name
    CCDC169-SOHLH2 readthroughprovided by HGNC
    Primary source
    HGNC:HGNC:38866
    See related
    Ensembl:ENSG00000120669; Ensembl:ENSG00000250709; Vega:OTTHUMG00000162258
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C13orf38-SOHLH2
    Summary
    This locus represents naturally occurring read-through transcription between the neighboring C13orf38 (chromosome 13 open reading frame 38) and SOHLH2 (spermatogenesis and oogenesis specific basic helix-loop-helix 2) genes. The read-through transcript encodes a fusion protein that shares sequence identity with the products of each individual gene. [provided by RefSeq, Nov 2010]
    Orthologs
    See CCDC169-SOHLH2 in Epigenomics, MapViewer
    Location:
    13q
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    107 current GRCh38.p2 (GCF_000001405.28) 13 NC_000013.11 (36168208..36297855, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (36742345..36871992, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene doublecortin-like kinase 1 Neighboring gene uncharacterized LOC105370162 Neighboring gene uncharacterized LOC105370164 Neighboring gene spermatogenesis and oogenesis specific basic helix-loop-helix 2 Neighboring gene coiled-coil domain containing 169 Neighboring gene RNA, U6 small nuclear 71, pseudogene Neighboring gene spastic paraplegia 20 (Troyer syndrome) Neighboring gene SPG20 antisense RNA 1 Neighboring gene cyclin A1

    NHGRI GWAS Catalog

    Description
    The genetic architecture of economic and political preferences.
    NHGRI GWA Catalog

    Homology

    Clone Names

    • FLJ57222, KIAA0369, KIAA0610
    Preferred Names
    CCDC169-SOHLH2 protein
    Names
    CCDC169-SOHLH2 protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001198910.1NP_001185839.1  CCDC169-SOHLH2 protein

      See identical proteins and their annotated locations for NP_001185839.1

      Status: VALIDATED

      Source sequence(s)
      AK301863, AL139377, AL160392
      Consensus CDS
      CCDS55896.1
      UniProtKB/Swiss-Prot
      Q9NX45
      Conserved Domains (2) summary
      cd00083
      Location:283334
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      pfam15372
      Location:182
      DUF4600; Domain of unknown function (DUF4600)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p2 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p2 Primary Assembly

      Range
      36168208..36297855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.1

    Genomic

    1. NC_018924.2 Alternate CHM1_1.1

      Range
      36709919..36839475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)