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    Cdhr1 cadherin-related family member 1 [ Mus musculus (house mouse) ]

    Gene ID: 170677, updated on 26-Jun-2015
    Official Symbol
    Cdhr1provided by MGI
    Official Full Name
    cadherin-related family member 1provided by MGI
    Primary source
    MGI:MGI:2157782
    See related
    Ensembl:ENSMUSG00000021803
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Prcad; Pcdh21; mKIAA1775
    Orthologs
    See Cdhr1 in Epigenomics, MapViewer
    Location:
    14; 14 B
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 14 NC_000080.6 (37077849..37098311, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (37891035..37911497, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 1 Neighboring gene leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 Neighboring gene RIKEN cDNA 2610528A11 gene Neighboring gene growth hormone inducible transmembrane protein

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    cellular process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
     
    photoreceptor cell maintenance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    photoreceptor outer segment membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    cadherin-related family member 1
    Names
    cadherin-related family member 1
    photoreceptor cadherin
    protocadherin 21
    protocadherin-21

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_130878.2NP_570948.1  cadherin-related family member 1 precursor

      See identical proteins and their annotated locations for NP_570948.1

      Status: PROVISIONAL

      Source sequence(s)
      BC058270
      Consensus CDS
      CCDS26952.1
      UniProtKB/Swiss-Prot
      Q8VHP6
      Related
      ENSMUSP00000022337, ENSMUST00000022337
      Conserved Domains (1) summary
      cd11304
      Location:139242
      Cadherin_repeat; Cadherin tandem repeat domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p3 C57BL/6J

      Range
      37077849..37098311
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Mm_Celera

    Genomic

    1. AC_000036.1 Alternate Mm_Celera

      Range
      33288873..33309346
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)