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    bcd bicoid [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40830, updated on 25-Aug-2016
    Official Symbol
    bcdprovided by FlyBase
    Official Full Name
    bicoidprovided by FlyBase
    Primary source
    FLYBASE:FBgn0000166
    Locus tag
    Dmel_CG1034
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Bcd; BCD; BG:DS00276.7; bic; CG1034; Dmel\CG1034; mum; prd4
    Location:
    84A5-84A5; 3-48 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.07 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (6755842..6759466, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (2581564..2585188, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene CG34297 gene product from transcript CG34297-RA Neighboring gene zerknullt Neighboring gene ncRNA Neighboring gene Amalgam Neighboring gene ncRNA

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    mRNA 3'-UTR binding IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    morphogen activity NAS
    Non-traceable Author Statement
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription factor activity, sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription factor activity, sequence-specific DNA binding NAS
    Non-traceable Author Statement
    more info
     
    translation regulator activity TAS
    Traceable Author Statement
    more info
    PubMed 
    translation repressor activity IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    anterior region determination IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    anterior/posterior axis specification TAS
    Traceable Author Statement
    more info
    PubMed 
    anterior/posterior axis specification, embryo NAS
    Non-traceable Author Statement
    more info
    PubMed 
    anterior/posterior axis specification, embryo TAS
    Traceable Author Statement
    more info
    PubMed 
    maternal determination of anterior/posterior axis, embryo NAS
    Non-traceable Author Statement
    more info
    PubMed 
    maternal determination of anterior/posterior axis, embryo TAS
    Traceable Author Statement
    more info
    PubMed 
    negative regulation of translation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    negative regulation of translation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of translation TAS
    Traceable Author Statement
    more info
    PubMed 
    oogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of transcription from RNA polymerase II promoter NAS
    Non-traceable Author Statement
    more info
    PubMed 
    regulation of transcription, DNA-templated IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated NAS
    Non-traceable Author Statement
    more info
    PubMed 
    regulation of translation TAS
    Traceable Author Statement
    more info
    PubMed 
    segment polarity determination IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IC
    Inferred by Curator
    more info
    PubMed 
    nucleus NAS
    Non-traceable Author Statement
    more info
     
    Preferred Names
    CG1034 gene product from transcript CG1034-RA
    Names
    CG1034-PA
    CG1034-PD
    CG1034-PE
    CG1034-PF
    CG1034-PG
    PRD gene 4
    bcd-PA
    bcd-PD
    bcd-PE
    bcd-PF
    bcd-PG
    bicoid
    multimorph

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      6755842..6759466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_057477.5NP_476825.1  bicoid, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_476825.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P09081
      Related
      FBpp0081164, FBtr0081664
    2. NM_169157.3NP_731111.1  bicoid, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_731111.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P09081
      Related
      FBpp0081165, FBtr0081665
      Conserved Domains (1) summary
      pfam00046
      Location:101148
      Homeobox; Homeobox domain
    3. NM_176410.3NP_788587.1  bicoid, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788587.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P09081
      Related
      FBpp0081168, FBtr0081668
      Conserved Domains (1) summary
      cd00086
      Location:108156
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    4. NM_176411.3NP_788588.1  bicoid, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788588.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P09081
      Related
      FBpp0081167, FBtr0081667
      Conserved Domains (1) summary
      pfam00046
      Location:2572
      Homeobox; Homeobox domain
    5. NM_169159.4NP_731113.2  bicoid, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_731113.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P09081
      Related
      FBpp0081166, FBtr0081666
      Conserved Domains (1) summary
      cd00086
      Location:3280
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.