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    Npas4 neuronal PAS domain protein 4 [ Mus musculus (house mouse) ]

    Gene ID: 225872, updated on 8-Aug-2016
    Official Symbol
    Npas4provided by MGI
    Official Full Name
    neuronal PAS domain protein 4provided by MGI
    Primary source
    MGI:MGI:2664186
    See related
    Ensembl:ENSMUSG00000045903
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nxf; LE-PAS
    Orthologs
    Location:
    19; 19 A
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (4984353..5001929, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (4984355..4989971, complement)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene pellino 3 Neighboring gene mitochondrial ribosomal protein L11 Neighboring gene predicted gene, 42063 Neighboring gene solute carrier family 29 (nucleoside transporters), member 2

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription factor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    neuronal PAS domain-containing protein 4
    Names
    HLH-PAS transcription factor NXF
    bHLH-PAS type transcription factor NXF
    limbic-enhanced PAS protein
    neuronal PAS4

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153553.4NP_705781.1  neuronal PAS domain-containing protein 4

      See identical proteins and their annotated locations for NP_705781.1

      Status: PROVISIONAL

      Source sequence(s)
      AY730724
      Consensus CDS
      CCDS29445.1
      UniProtKB/Swiss-Prot
      Q8BGD7
      Related
      ENSMUSP00000062992, ENSMUST00000056129
      Conserved Domains (3) summary
      smart00091
      Location:72135
      PAS; PAS domain
      cd00130
      Location:216296
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam14598
      Location:219321
      PAS_11; PAS domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      4984353..5001929 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531720.3XP_006531783.1  

      See identical proteins and their annotated locations for XP_006531783.1

      UniProtKB/Swiss-Prot
      Q8BGD7
      Conserved Domains (3) summary
      smart00091
      Location:72135
      PAS; PAS domain
      cd00130
      Location:216296
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam14598
      Location:219321
      PAS_11; PAS domain
    2. XM_006531721.3XP_006531784.1  

      See identical proteins and their annotated locations for XP_006531784.1

      UniProtKB/Swiss-Prot
      Q8BGD7
      Conserved Domains (3) summary
      smart00091
      Location:72135
      PAS; PAS domain
      cd00130
      Location:216296
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam14598
      Location:219321
      PAS_11; PAS domain
    3. XM_011248619.2XP_011246921.1  

      See identical proteins and their annotated locations for XP_011246921.1

      UniProtKB/Swiss-Prot
      Q8BGD7
      Conserved Domains (3) summary
      smart00091
      Location:72135
      PAS; PAS domain
      cd00130
      Location:216296
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam14598
      Location:219321
      PAS_11; PAS domain