Display Settings:

Format

Send to:

Choose Destination
    • Showing Current items.

    Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 [ Mus musculus (house mouse) ]

    Gene ID: 233552, updated on 18-Jul-2015
    Official Symbol
    Gdpd5provided by MGI
    Official Full Name
    glycerophosphodiester phosphodiesterase domain containing 5provided by MGI
    Primary source
    MGI:MGI:2686926
    See related
    Ensembl:ENSMUSG00000035314
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gde2; BC024955
    Orthologs
    See Gdpd5 in Epigenomics, MapViewer
    Location:
    7; 7 E2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 7 NC_000073.6 (99381415..99460984)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (106530059..106609494)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 6 Neighboring gene predicted gene, 40449 Neighboring gene serine (or cysteine) peptidase inhibitor, clade H, member 1 Neighboring gene kelch-like 35 Neighboring gene small nucleolar RNA, C/D box 14B Neighboring gene ribosomal protein S3

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Homology

    Clone Names

    • MGC31332, MGC37148

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    T/G mismatch-specific endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
     
    glycerophosphodiester phosphodiesterase activity ISO
    Inferred from Sequence Orthology
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    nuclease activity IEA
    Inferred from Electronic Annotation
    more info
     
    phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    phosphoric ester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    retroviral 3' processing activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cerebral cortex neuron differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    glycerol metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of Notch signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of Notch signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    neuron projection development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of neuron differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of timing of cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    spinal cord motor neuron differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    glycerophosphodiester phosphodiesterase domain-containing protein 5
    Names
    glycerophosphodiester phosphodiesterase 2

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201352.2NP_958740.2  glycerophosphodiester phosphodiesterase domain-containing protein 5

      See identical proteins and their annotated locations for NP_958740.2

      Status: PROVISIONAL

      Source sequence(s)
      BC082585
      Consensus CDS
      CCDS21481.1
      UniProtKB/Swiss-Prot
      Q640M6
      Related
      ENSMUSP00000036175, ENSMUST00000037528
      Conserved Domains (2) summary
      COG0584
      Location:227468
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      cl14615
      Location:227576
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p3 C57BL/6J

      Range
      99381415..99460984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011241738.1XP_011240040.1  

      See identical proteins and their annotated locations for XP_011240040.1

      Conserved Domains (2) summary
      COG0584
      Location:227468
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      cl14615
      Location:227581
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
    2. XM_006507634.1XP_006507697.1  

      See identical proteins and their annotated locations for XP_006507697.1

      Conserved Domains (2) summary
      COG0584
      Location:227468
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      cl14615
      Location:227581
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
    3. XM_006507633.1XP_006507696.1  

      See identical proteins and their annotated locations for XP_006507696.1

      Conserved Domains (2) summary
      COG0584
      Location:227468
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      cl14615
      Location:227581
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
    4. XM_006507632.1XP_006507695.1  

      See identical proteins and their annotated locations for XP_006507695.1

      Conserved Domains (2) summary
      COG0584
      Location:227468
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      cl14615
      Location:227581
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
    5. XM_006507635.1XP_006507698.1  

      Conserved Domains (2) summary
      COG0584
      Location:207448
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      cl14615
      Location:207561
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
    6. XM_006507636.1XP_006507699.1  

      Conserved Domains (2) summary
      COG0584
      Location:170411
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      cl14615
      Location:170524
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
    7. XM_006507637.1XP_006507700.1  

      Conserved Domains (2) summary
      COG0584
      Location:148389
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      cl14615
      Location:148502
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily
    8. XM_006507639.1XP_006507702.1  

      Conserved Domains (2) summary
      COG0584
      Location:227316
      UgpQ; Glycerophosphoryl diester phosphodiesterase [Lipid transport and metabolism]
      cl14615
      Location:227316
      PI-PLCc_GDPD_SF; Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

    Alternate Mm_Celera

    Genomic

    1. AC_000029.1 Alternate Mm_Celera

      Range
      99706372..99785694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)