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SUB receptor-like kinase STRUBBELIG [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837654, updated on 7-Dec-2014
Gene symbol
SUB
Gene description
receptor-like kinase STRUBBELIG
Primary source
TAIR:AT1G11130
Locus tag
AT1G11130
Gene type
protein coding
RNA name
receptor-like kinase STRUBBELIG
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT1G11140; SCM; SCRAMBLED; SRF9; STRUBBELIG; STRUBBELIG-RECEPTOR FAMILY 9; SUB; T19D16.8
Summary
Encodes a receptor-like kinase protein with a predicted extracellular domain of six leucine-rich repeats and an intracellular serine-threonine kinase domain expressed throughout the developing root. Regulates expression of GLABRA2, CAPRICE, WEREWOLF, and ENHANCER OF GLABRA3. Required for floral organ shape, the development of the outer integument of ovules, and stem development. Regulates cell shape and cell division planes in the L2 layer of floral meristems and the L1-derived outer integument of ovules. Controls specification of epidermal root hairs. Participates in the coordination of cell morphogenesis between cell layers during floral development.
See SUB in MapViewer
Location:
chromosome: 1
Exon count:
16
Sequence:
Chromosome: 1; NC_003070.9 (3722857..3727450)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene pseudo

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description
NM_100986.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
receptor signaling protein serine/threonine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
cell morphogenesis IEP
Inferred from Expression Pattern
more info
PubMed 
cell morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
floral organ development IEP
Inferred from Expression Pattern
more info
PubMed 
floral organ development IMP
Inferred from Mutant Phenotype
more info
PubMed 
leaf development IMP
Inferred from Mutant Phenotype
more info
PubMed 
leaf morphogenesis RCA
inferred from Reviewed Computational Analysis
more info
PubMed 
leaf vascular tissue pattern formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
ovule development IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of atrichoblast fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of trichoblast fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
root meristem specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
shoot system development TAS
Traceable Author Statement
more info
PubMed 
signal transduction IC
Inferred by Curator
more info
PubMed 
Component Evidence Code Pubs
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
plasmodesma IDA
Inferred from Direct Assay
more info
PubMed 
Names
receptor-like kinase STRUBBELIG
NP_172580.2
  • Leucine-rich repeat protein kinase family protein STRUBBELIG (SUB); FUNCTIONS IN: receptor signaling protein serine/threonine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 3 (TAIR:AT4G03390.1); Has 153928 Blast hits to 101875 proteins in 2737 species: Archae - 122; Bacteria - 10876; Metazoa - 38100; Fungi - 7570; Plants - 81122; Viruses - 718; Other Eukaryotes - 15420 (source: NCBI BLink).

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 

    Range
    3722857..3727450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100986.3NP_172580.2  receptor-like kinase STRUBBELIG [Arabidopsis thaliana]

    See proteins identical to NP_172580.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    C0LGE3
    UniProtKB/Swiss-Prot
    Q8RWZ1
    Conserved Domains (4) summary
    cd00180
    Location:503764
    PKc; Catalytic domain of Protein Kinases
    cd00116
    Location:85200
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    pfam00069
    Location:502763
    Pkinase; Protein kinase domain
    pfam13855
    Location:141199
    LRR_8; Leucine rich repeat