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Sfpq splicing factor proline/glutamine-rich [ Rattus norvegicus (Norway rat) ]

Gene ID: 252855, updated on 5-Apr-2015
Official Symbol
Sfpqprovided by RGD
Official Full Name
splicing factor proline/glutamine-richprovided by RGD
Primary source
RGD:727923
See related
Ensembl:ENSRNOG00000013154
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Summary
FGF-induced protein related to a family of RNA- and DNA-binding proteins [RGD, Feb 2006]
Orthologs
See Sfpq in MapViewer
Location:
5q36
Exon count:
10
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (145079803..145088517)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (148849944..148858919)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene similar to ribosomal protein S11 Neighboring gene similar to nucleolar protein family A, member 2 Neighboring gene zinc finger, MYM-type 1 Neighboring gene zinc finger, MYM-type 6

  • mRNA processing, organism-specific biosystem (from WikiPathways)
    mRNA processing, organism-specific biosystemThis process describes the conversion of precursor messenger RNA into mature messenger RNA (mRNA). The pre-mRNA molecule undergoes three main modifications. These modifications are 5' capping, 3' pol...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC112723

Gene Ontology Provided by RGD

Function Evidence Code Pubs
core promoter binding IEA
Inferred from Electronic Annotation
more info
 
core promoter binding ISO
Inferred from Sequence Orthology
more info
 
histone deacetylase binding ISO
Inferred from Sequence Orthology
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
transcription regulatory region DNA binding ISO
Inferred from Sequence Orthology
more info
 
transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
transcription regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
alternative mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
 
cellular response to DNA damage stimulus ISO
Inferred from Sequence Orthology
more info
 
chromosome organization ISO
Inferred from Sequence Orthology
more info
 
double-strand break repair via homologous recombination ISO
Inferred from Sequence Orthology
more info
 
histone H3 deacetylation IEA
Inferred from Electronic Annotation
more info
 
histone H3 deacetylation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of circadian rhythm IEA
Inferred from Electronic Annotation
more info
 
negative regulation of circadian rhythm ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway ISO
Inferred from Sequence Orthology
more info
 
positive regulation of sister chromatid cohesion ISO
Inferred from Sequence Orthology
more info
 
regulation of cell cycle ISO
Inferred from Sequence Orthology
more info
 
regulation of circadian rhythm ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
chromatin ISO
Inferred from Sequence Orthology
more info
 
nuclear matrix ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
paraspeckles IEA
Inferred from Electronic Annotation
more info
 
paraspeckles ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
splicing factor, proline- and glutamine-rich
Names
splicing factor, proline- and glutamine-rich
NonO/p54nrb homolog
splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025271.1NP_001020442.1  splicing factor, proline- and glutamine-rich

    See identical proteins and their annotated locations for NP_001020442.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098731
    UniProtKB/TrEMBL
    Q4KM71
    Related
    ENSRNOP00000018049, ENSRNOT00000018049
    Conserved Domains (3) summary
    cd12948
    Location:434530
    NOPS_PSF; NOPS domain, including C-terminal coiled-coil region, in polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF) and similar proteins
    cd12333
    Location:364443
    RRM2_p54nrb_like; RNA recognition motif 2 in the p54nrb/PSF/PSP1 family
    cd12587
    Location:288358
    RRM1_PSF; RNA recognition motif 1 in vertebrate polypyrimidine tract-binding protein (PTB)-associated-splicing factor (PSF)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

    Range
    145079803..145088517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000073.1 Alternate Rn_Celera

    Range
    137833201..137841438
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)