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    Foxp4 forkhead box P4 [ Mus musculus (house mouse) ]

    Gene ID: 74123, updated on 25-Jul-2015
    Official Symbol
    Foxp4provided by MGI
    Official Full Name
    forkhead box P4provided by MGI
    Primary source
    MGI:MGI:1921373
    See related
    Ensembl:ENSMUSG00000023991; Vega:OTTMUSG00000018348
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mFKHLA; 1200010K03Rik; 2310007G05Rik
    Orthologs
    See Foxp4 in Epigenomics, MapViewer
    Location:
    17; 17 C
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 17 NC_000083.6 (47867133..47924645, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (48004082..48061581, complement)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene transcription factor EB Neighboring gene MyoD family inhibitor Neighboring gene predicted gene, 38637 Neighboring gene macrophage migration inhibitory factor, pseudogene 8 Neighboring gene predicted gene, 29938

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    forkhead box protein P4
    Names
    fork head-related protein like A
    fork head-related protein-like A
    foxp4

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110824.1NP_001104294.1  forkhead box protein P4 isoform 1

      See identical proteins and their annotated locations for NP_001104294.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      BC052407, BC057110
      Consensus CDS
      CCDS50137.1
      UniProtKB/Swiss-Prot
      Q9DBY0
      Conserved Domains (1) summary
      cd00059
      Location:472544
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    2. NM_001110825.1NP_001104295.1  forkhead box protein P4 isoform 2

      See identical proteins and their annotated locations for NP_001104295.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate splice site in the central coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
      Source sequence(s)
      AB052766, BC052407, BC057110
      Consensus CDS
      CCDS50136.1
      UniProtKB/Swiss-Prot
      Q9DBY0
      Related
      ENSMUSP00000108887, OTTMUSP00000019908, ENSMUST00000113262, OTTMUST00000044308
      Conserved Domains (1) summary
      cd00059
      Location:460532
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    3. NM_028767.2NP_083043.2  forkhead box protein P4 isoform 3

      See identical proteins and their annotated locations for NP_083043.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) has two alternate splice sites in the coding region, compared to variant 1. The resulting isoform (3) lacks an internal aa and an internal segment, compared to variant 1.
      Source sequence(s)
      BC052407, BC057110
      Consensus CDS
      CCDS50135.1
      UniProtKB/Swiss-Prot
      Q9DBY0
      Related
      ENSMUSP00000108890, OTTMUSP00000019906, ENSMUST00000113265, OTTMUST00000044306
      Conserved Domains (1) summary
      cd00059
      Location:459531
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p3 C57BL/6J

      Range
      47867133..47924645
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525017.2XP_006525080.1  

      UniProtKB/Swiss-Prot
      Q9DBY0
      Conserved Domains (1) summary
      cd00059
      Location:471543
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    2. XM_006525016.2XP_006525079.1  

      See identical proteins and their annotated locations for XP_006525079.1

      UniProtKB/Swiss-Prot
      Q9DBY0
      Conserved Domains (1) summary
      cd00059
      Location:472544
      FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...

    Alternate Mm_Celera

    Genomic

    1. AC_000039.1 Alternate Mm_Celera

      Range
      51308820..51367567
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)