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Dcn decorin [ Mus musculus (house mouse) ]

Gene ID: 13179, updated on 9-May-2015
Official Symbol
Dcnprovided by MGI
Official Full Name
decorinprovided by MGI
Primary source
MGI:MGI:94872
See related
Ensembl:ENSMUSG00000019929
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
DC; PG40; PGII; PGS2; mDcn; DSPG2; SLRR1B
Orthologs
See Dcn in MapViewer
Location:
10 C3; 10 50.27 cM
Exon count:
9
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 10 NC_000076.6 (97479500..97518162)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (96942134..96980796)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene CWC15 homolog pseudogene Neighboring gene predicted gene, 34114 Neighboring gene microRNA 3966 Neighboring gene RIKEN cDNA 4930473O22 gene Neighboring gene lumican

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
collagen binding ISO
Inferred from Sequence Orthology
more info
 
extracellular matrix binding IDA
Inferred from Direct Assay
more info
PubMed 
glycosaminoglycan binding IDA
Inferred from Direct Assay
more info
PubMed 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
protein N-terminus binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of autophagy ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
collagen type VI trimer ISO
Inferred from Sequence Orthology
more info
 
colocalizes_with extracellular matrix ISO
Inferred from Sequence Orthology
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space ISO
Inferred from Sequence Orthology
more info
 
proteinaceous extracellular matrix ISO
Inferred from Sequence Orthology
more info
 
proteinaceous extracellular matrix ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Preferred Names
decorin
Names
decorin
bone proteoglycan II

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190451.1NP_001177380.1  decorin preproprotein

    See identical proteins and their annotated locations for NP_001177380.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC159710, AK145905, BG088078
    Consensus CDS
    CCDS24141.1
    UniProtKB/Swiss-Prot
    P28654
    UniProtKB/TrEMBL
    Q3UKR1
    Related
    ENSMUSP00000100924, ENSMUST00000105287
    Conserved Domains (3) summary
    smart00013
    Location:4880
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:79285
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    pfam13855
    Location:81136
    LRR_8; Leucine rich repeat
  2. NM_007833.5NP_031859.1  decorin preproprotein

    See identical proteins and their annotated locations for NP_031859.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC159710
    Consensus CDS
    CCDS24141.1
    UniProtKB/Swiss-Prot
    P28654
    UniProtKB/TrEMBL
    Q3UKR1
    Related
    ENSMUSP00000131431, ENSMUST00000163448
    Conserved Domains (3) summary
    smart00013
    Location:4880
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:79285
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    pfam13855
    Location:81136
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p3 C57BL/6J

    Range
    97479500..97518162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000032.1 Alternate Mm_Celera

    Range
    99450242..99488904
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)