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orb oo18 RNA-binding protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 42752, updated on 5-Apr-2015
Official Symbol
orbprovided by FlyBase
Official Full Name
oo18 RNA-binding proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0004882
Locus tag
Dmel_CG10868
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
151666_s_at; CG10868; Dmel\CG10868; fs(3)00107; oo18; Orb; ORB
See orb in MapViewer
Location:
94E9-94E9
Exon count:
12
Annotation release Status Assembly Chr Location
Release 6.01 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (23260610..23280856, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (19086332..19106578, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Elongin A Neighboring gene will decrease acetylation Neighboring gene CG13827 gene product from transcript CG13827-RA Neighboring gene Cell division cycle 16 ortholog Neighboring gene CG6763 gene product from transcript CG6763-RA Neighboring gene CG17083 gene product from transcript CG17083-RA

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
mRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
mRNA binding TAS
Traceable Author Statement
more info
PubMed 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
uridine-rich cytoplasmic polyadenylylation element binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
dorsal/ventral axis specification, ovarian follicular epithelium IGI
Inferred from Genetic Interaction
more info
PubMed 
dorsal/ventral axis specification, ovarian follicular epithelium IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic axis specification TAS
Traceable Author Statement
more info
PubMed 
germ cell development IMP
Inferred from Mutant Phenotype
more info
PubMed 
germ cell development TAS
Traceable Author Statement
more info
PubMed 
germ-line cyst formation TAS
Traceable Author Statement
more info
PubMed 
germarium-derived oocyte fate determination TAS
Traceable Author Statement
more info
PubMed 
intracellular mRNA localization TAS
Traceable Author Statement
more info
PubMed 
mRNA polyadenylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA polyadenylation ISS
Inferred from Sequence or Structural Similarity
more info
 
oocyte anterior/posterior axis specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
oocyte anterior/posterior axis specification TAS
Traceable Author Statement
more info
PubMed 
oocyte axis specification TAS
Traceable Author Statement
more info
PubMed 
oocyte dorsal/ventral axis specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
oocyte dorsal/ventral axis specification TAS
Traceable Author Statement
more info
PubMed 
oogenesis TAS
Traceable Author Statement
more info
PubMed 
pole plasm assembly NAS
Non-traceable Author Statement
more info
PubMed 
pole plasm oskar mRNA localization IMP
Inferred from Mutant Phenotype
more info
PubMed 
pole plasm oskar mRNA localization NAS
Non-traceable Author Statement
more info
PubMed 
pole plasm oskar mRNA localization TAS
Traceable Author Statement
more info
PubMed 
positive regulation of oskar mRNA translation NAS
Non-traceable Author Statement
more info
PubMed 
positive regulation of translation TAS
Traceable Author Statement
more info
PubMed 
regulation of oskar mRNA translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of oskar mRNA translation TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with ribonucleoprotein complex IPI
Inferred from Physical Interaction
more info
PubMed 
Preferred Names
CG10868 gene product from transcript CG10868-RG
Names
CG10868-PA
CG10868-PB
CG10868-PC
CG10868-PD
CG10868-PE
CG10868-PF
CG10868-PG
ORB
oo18 RNA binding
oo18 RNA-binding protein
orb-PA
orb-PB
orb-PC
orb-PD
orb-PE
orb-PF
orb-PG

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    23260610..23280856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001275941.1NP_001262870.1  oo18 RNA-binding protein, isoform G [Drosophila melanogaster]

    See proteins identical to NP_001262870.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VCN7
    Related
    FBpp0306565, FBtr0334498
    Conserved Domains (2) summary
    cd12723
    Location:574674
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:685770
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
  2. NM_079736.3NP_524460.2  oo18 RNA-binding protein, isoform A [Drosophila melanogaster]

    See proteins identical to NP_524460.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VCN7
    Related
    FBpp0083776, FBtr0084384
    Conserved Domains (2) summary
    cd12723
    Location:574674
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:685770
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
  3. NM_170062.2NP_732848.1  oo18 RNA-binding protein, isoform B [Drosophila melanogaster]

    See proteins identical to NP_732848.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IMZ3
    Related
    FBpp0083777, FBtr0084385
    Conserved Domains (2) summary
    cd12723
    Location:572672
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:683768
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
  4. NM_170064.2NP_732850.1  oo18 RNA-binding protein, isoform C [Drosophila melanogaster]

    See proteins identical to NP_732850.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IMZ2
    Related
    FBpp0083778, FBtr0084386
    Conserved Domains (2) summary
    cd12723
    Location:218318
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:329414
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
  5. NM_170063.2NP_732849.2  oo18 RNA-binding protein, isoform D [Drosophila melanogaster]

    See proteins identical to NP_732849.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IMZ3
    Related
    FBpp0099606, FBtr0100227
    Conserved Domains (2) summary
    cd12723
    Location:572672
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:683768
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
  6. NM_170065.2NP_732851.2  oo18 RNA-binding protein, isoform E [Drosophila melanogaster]

    See proteins identical to NP_732851.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IMZ2
    Related
    FBpp0099607, FBtr0100228
    Conserved Domains (2) summary
    cd12723
    Location:218318
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:329414
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
  7. NM_001170228.1NP_001163699.1  oo18 RNA-binding protein, isoform F [Drosophila melanogaster]

    See proteins identical to NP_001163699.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IHC3
    Related
    FBpp0290706, FBtr0301491
    Conserved Domains (2) summary
    cd12723
    Location:276376
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:387472
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins