Display Settings:

Format

Send to:

Choose Destination

ABI4 ethylene-responsive transcription factor ABI4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818614, updated on 14-Jul-2014
Gene symbol
ABI4
Gene description
ethylene-responsive transcription factor ABI4
Primary source
TAIR:AT2G40220
Locus tag
AT2G40220
Gene type
protein coding
RNA name
ethylene-responsive transcription factor ABI4
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ABA INSENSITIVE 4; ABI4; ABSCISIC ACID-INSENSITIVE PROTEIN 4; ATABI4; GIN6; GLUCOSE INSENSITIVE 6; IMPAIRED SUCROSE INDUCTION 3; ISI3; SALOBRENO 5; SAN5; SIS5; SUCROSE UNCOUPLED 6; SUGAR-INSENSITIVE 5; SUN6; T7M7.16
Summary
encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.
See ABI4 in MapViewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (16796599..16797585, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L41 Neighboring gene protein agamous-like 48 Neighboring gene putative CoA-dependent acyltransferase Neighboring gene hypothetical protein

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description
NM_129580.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
sequence-specific DNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
sequence-specific DNA binding transcription factor activity TAS
Traceable Author Statement
more info
PubMed 
transcription regulatory region DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
abscisic acid-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryo development ending in seed dormancy RCA
inferred from Reviewed Computational Analysis
more info
 
hexokinase-dependent signaling NAS
Non-traceable Author Statement
more info
 
lateral root development IMP
Inferred from Mutant Phenotype
more info
 
lipid storage RCA
inferred from Reviewed Computational Analysis
more info
 
meristem structural organization RCA
inferred from Reviewed Computational Analysis
more info
 
mitochondria-nucleus signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
mitochondria-nucleus signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
photomorphogenesis RCA
inferred from Reviewed Computational Analysis
more info
 
positive regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
protein ubiquitination RCA
inferred from Reviewed Computational Analysis
more info
 
regulation of flower development RCA
inferred from Reviewed Computational Analysis
more info
 
regulation of protein localization IDA
Inferred from Direct Assay
more info
 
regulation of transcription, DNA-templated ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of transcription, DNA-templated TAS
Traceable Author Statement
more info
PubMed 
regulation of triglyceride catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to abscisic acid RCA
inferred from Reviewed Computational Analysis
more info
 
response to freezing RCA
inferred from Reviewed Computational Analysis
more info
 
response to glucose IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to osmotic stress IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to sucrose IEP
Inferred from Expression Pattern
more info
PubMed 
response to trehalose IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to water deprivation IMP
Inferred from Mutant Phenotype
more info
PubMed 
root meristem growth IMP
Inferred from Mutant Phenotype
more info
 
seed development IMP
Inferred from Mutant Phenotype
more info
PubMed 
seed dormancy process RCA
inferred from Reviewed Computational Analysis
more info
 
seed germination RCA
inferred from Reviewed Computational Analysis
more info
 
starch catabolic process NAS
Non-traceable Author Statement
more info
PubMed 
sugar mediated signaling pathway RCA
inferred from Reviewed Computational Analysis
more info
 
sugar mediated signaling pathway TAS
Traceable Author Statement
more info
PubMed 
vegetative to reproductive phase transition of meristem RCA
inferred from Reviewed Computational Analysis
more info
 
Component Evidence Code Pubs
nucleus ISM
Inferred from Sequence Model
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
Names
ethylene-responsive transcription factor ABI4
NP_181551.1
  • ABA INSENSITIVE 4 (ABI4); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G57600.1); Has 5833 Blast hits to 5755 proteins in 285 species: Archae - 0; Bacteria - 4; Metazoa - 56; Fungi - 8; Plants - 5653; Viruses - 6; Other Eukaryotes - 106 (source: NCBI BLink).

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 

    Range
    16796599..16797585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129580.1NP_181551.1  ethylene-responsive transcription factor ABI4 [Arabidopsis thaliana]

    See proteins identical to NP_181551.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0MES8
    Conserved Domains (1) summary
    cd00018
    Location:54109
    Blast Score: 194
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...