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Lcn2 lipocalin 2 [ Mus musculus (house mouse) ]

Gene ID: 16819, updated on 8-Dec-2014
Official Symbol
Lcn2provided by MGI
Official Full Name
lipocalin 2provided by MGI
Primary source
MGI:MGI:96757
Locus tag
RP23-161B9.11-003
See related
Ensembl:ENSMUSG00000026822; Vega:OTTMUSG00000012958
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
24p3; Sip24; AW212229
See Lcn2 in Epigenomics, MapViewer
Location:
2 A3; 2 22.09 cM
Exon count:
6
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 2 NC_000068.7 (32384637..32387739, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene CDKN1A interacting zinc finger protein 1 Neighboring gene RIKEN cDNA 1110008P14 gene Neighboring gene prostaglandin E synthase 2 Neighboring gene 60S ribosomal protein L15-like

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
iron ion binding IDA
Inferred from Direct Assay
more info
PubMed 
protease binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
small molecule binding IEA
Inferred from Electronic Annotation
more info
 
transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
cellular response to hydrogen peroxide ISO
Inferred from Sequence Orthology
more info
 
extrinsic apoptotic signaling pathway in absence of ligand IDA
Inferred from Direct Assay
more info
PubMed 
immune system process IEA
Inferred from Electronic Annotation
more info
 
innate immune response IMP
Inferred from Mutant Phenotype
more info
PubMed 
ion transport IEA
Inferred from Electronic Annotation
more info
 
iron ion homeostasis IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cell projection organization ISO
Inferred from Sequence Orthology
more info
 
positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
protein homotrimerization ISO
Inferred from Sequence Orthology
more info
 
response to drug ISO
Inferred from Sequence Orthology
more info
 
response to herbicide ISO
Inferred from Sequence Orthology
more info
 
response to virus IDA
Inferred from Direct Assay
more info
PubMed 
siderophore transport IDA
Inferred from Direct Assay
more info
PubMed 
siderophore transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell IMP
Inferred from Mutant Phenotype
more info
PubMed 
cytosol ISO
Inferred from Sequence Orthology
more info
 
extracellular region IDA
Inferred from Direct Assay
more info
PubMed 
extracellular space ISO
Inferred from Sequence Orthology
more info
 
extracellular vesicular exosome ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
neutrophil gelatinase-associated lipocalin
Names
neutrophil gelatinase-associated lipocalin
p25
lipocalin-2
siderocalin LCN2
SV-40-induced 24P3 protein
secreted inducible protein 24

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008491.1NP_032517.1  neutrophil gelatinase-associated lipocalin precursor

    See proteins identical to NP_032517.1

    Status: PROVISIONAL

    Source sequence(s)
    X14607
    Consensus CDS
    CCDS15913.1
    UniProtKB/Swiss-Prot
    P11672
    Related
    ENSMUSP00000053962, OTTMUSP00000013951, ENSMUST00000050785, OTTMUST00000031183
    Conserved Domains (1) summary
    pfam00061
    Location:49195
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000068.7 

    Range
    32384637..32387739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000024.1 

    Range
    32090046..32093150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)