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    Clcn7 chloride channel 7 [ Mus musculus (house mouse) ]

    Gene ID: 26373, updated on 25-Jul-2015
    Official Symbol
    Clcn7provided by MGI
    Official Full Name
    chloride channel 7provided by MGI
    Primary source
    MGI:MGI:1347048
    See related
    Ensembl:ENSMUSG00000036636; Vega:OTTMUSG00000031166
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    ClC-7; AA409691; AW538136; D17Wsu51e
    Orthologs
    See Clcn7 in Epigenomics, MapViewer
    Location:
    17 A3.3; 17 12.53 cM
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 17 NC_000083.6 (25133379..25162100)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (25270339..25299044)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene TEL2, telomere maintenance 2, homolog (S. cerevisiae) Neighboring gene pentraxin 4 Neighboring gene coiled-coil domain containing 154 Neighboring gene predicted gene, 38655

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    antiporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    ion channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    voltage-gated chloride channel activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    chloride transport IEA
    Inferred from Electronic Annotation
    more info
     
    ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    response to pH ISO
    Inferred from Sequence Orthology
    more info
     
    transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasmic vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    lysosomal membrane ISO
    Inferred from Sequence Orthology
    more info
     
    lysosome IEA
    Inferred from Electronic Annotation
    more info
     
    membrane ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    H(+)/Cl(-) exchange transporter 7
    Names
    chloride channel 7 alpha subunit
    chloride channel protein 7

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011930.3NP_036060.1  H(+)/Cl(-) exchange transporter 7

      See identical proteins and their annotated locations for NP_036060.1

      Status: PROVISIONAL

      Source sequence(s)
      AK030444
      Consensus CDS
      CCDS28509.1
      UniProtKB/Swiss-Prot
      O70496
      UniProtKB/TrEMBL
      Q6RUT9
      Related
      ENSMUSP00000035964, OTTMUSP00000040785, ENSMUST00000040729, OTTMUST00000077220
      Conserved Domains (3) summary
      COG0517
      Location:736793
      CBS; CBS domain [Signal transduction mechanisms]
      cd03685
      Location:93618
      ClC_6_like; ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family ...
      cd04591
      Location:634788
      CBS_pair_EriC_assoc_euk_bac; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p3 C57BL/6J

      Range
      25133379..25162100
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006524296.1XP_006524359.1  

      Conserved Domains (1) summary
      cd03685
      Location:93555
      ClC_6_like; ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family ...
    2. XM_011246471.1XP_011244773.1  

      UniProtKB/TrEMBL
      E9PYL4
      Related
      ENSMUSP00000124194, OTTMUSP00000040786, ENSMUST00000160961, OTTMUST00000077221
      Conserved Domains (3) summary
      COG0517
      Location:716773
      CBS; CBS domain [Signal transduction mechanisms]
      cd03685
      Location:73598
      ClC_6_like; ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family ...
      cd04591
      Location:614768
      CBS_pair_EriC_assoc_euk_bac; This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of ...

    RNA

    1. XR_385328.2 RNA Sequence

    Alternate Mm_Celera

    Genomic

    1. AC_000039.1 Alternate Mm_Celera

      Range
      25662706..25691659
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)