Display Settings:

Format

Send to:

Choose Destination

Sema4b sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [ Mus musculus (house mouse) ]

Gene ID: 20352, updated on 19-Sep-2014
Official Symbol
Sema4bprovided by MGI
Official Full Name
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Bprovided by MGI
Primary source
MGI:MGI:107559
See related
Ensembl:ENSMUSG00000030539; Vega:OTTMUSG00000021122
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SemC; Semac; mKIAA1745
See Sema4b in Epigenomics, MapViewer
Location:
7 D2; 7
Exon count:
16
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 7 NC_000073.6 (80186841..80226527)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 710 Neighboring gene predicted gene, 21057 Neighboring gene isocitrate dehydrogenase 2 (NADP+), mitochondrial Neighboring gene calcium and integrin binding 1 (calmyrin) Neighboring gene GDP-D-glucose phosphorylase 1

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Axon guidance, organism-specific biosystem (from KEGG)
    Axon guidance, organism-specific biosystemAxon guidance represents a key stage in the formation of neuronal network. Axons are guided by a variety of guidance factors, such as netrins, ephrins, Slits, and semaphorins. These guidance cues are...
  • Axon guidance, conserved biosystem (from KEGG)
    Axon guidance, conserved biosystemAxon guidance represents a key stage in the formation of neuronal network. Axons are guided by a variety of guidance factors, such as netrins, ephrins, Slits, and semaphorins. These guidance cues are...

Markers

Homology

Clone Names

  • KIAA1745

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
multicellular organismal development IEA
Inferred from Electronic Annotation
more info
 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
postsynaptic membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
synapse IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
semaphorin-4B
Names
semaphorin-4B
sema C
semaphorin-C

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013659.4NP_038687.2  semaphorin-4B precursor

    See proteins identical to NP_038687.2

    Status: VALIDATED

    Source sequence(s)
    AC109232, AK145570
    Consensus CDS
    CCDS21391.1
    UniProtKB/Swiss-Prot
    Q62179
    Related
    ENSMUSP00000032754, OTTMUSP00000023270, ENSMUST00000032754, OTTMUST00000050002
    Conserved Domains (4) summary
    cd05872
    Location:579663
    Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B
    smart00630
    Location:57486
    Sema; semaphorin domain
    pfam01437
    Location:512535
    PSI; Plexin repeat
    cl15693
    Location:48511
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000073.6 

    Range
    80186841..80226527
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006540728.1XP_006540791.1  

    Conserved Domains (4) summary
    cd05872
    Location:652736
    Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B
    smart00630
    Location:130559
    Sema; semaphorin domain
    pfam01437
    Location:585608
    PSI; Plexin repeat
    cl15693
    Location:121584
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

Alternate Mm_Celera

Genomic

  1. AC_000029.1 

    Range
    77588064..77627863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)