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    Hormad1 HORMA domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 67981, updated on 30-Jul-2015
    Official Symbol
    Hormad1provided by MGI
    Official Full Name
    HORMA domain containing 1provided by MGI
    Primary source
    MGI:MGI:1915231
    See related
    Ensembl:ENSMUSG00000028109; Vega:OTTMUSG00000022048
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nohma; 4921522K05Rik
    Orthologs
    See Hormad1 in Epigenomics, MapViewer
    Location:
    3; 3 F2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 3 NC_000069.6 (95559640..95587940)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (95363599..95391593)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 40096 Neighboring gene high mobility group box 1, pseudogene 5 Neighboring gene cathepsin S Neighboring gene predicted gene, 40097 Neighboring gene golgi phosphoprotein 3-like Neighboring gene ribosomal protein S10, pseudogene 1

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    blastocyst development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    meiotic DNA double-strand break formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    meiotic recombination checkpoint IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    meiotic sister chromatid cohesion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    oogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of homologous chromosome segregation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    synapsis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    synaptonemal complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    condensed nuclear chromosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    synaptonemal complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    HORMA domain-containing protein 1
    Names
    HORMA domain containing protein
    newborn ovary HORMA protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001289532.1NP_001276461.1  HORMA domain-containing protein 1 isoform a

      See identical proteins and their annotated locations for NP_001276461.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (a).
      Source sequence(s)
      AK014945, AK016743, AV259564, AW552644
      Consensus CDS
      CCDS71292.1
      UniProtKB/Swiss-Prot
      Q9D5T7
      Related
      ENSMUSP00000029754, OTTMUSP00000024807, ENSMUST00000029754, OTTMUST00000052344
      Conserved Domains (1) summary
      pfam02301
      Location:23221
      HORMA; HORMA domain
    2. NM_001289534.1NP_001276463.1  HORMA domain-containing protein 1 isoform b

      See identical proteins and their annotated locations for NP_001276463.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a. Variants 2, 3, and 4 all encode the same isoform (b).
      Source sequence(s)
      AK016743, AV259564, AW552644, BC051129
      Consensus CDS
      CCDS38547.1
      UniProtKB/Swiss-Prot
      Q9D5T7
      Related
      ENSMUSP00000102772, OTTMUSP00000024805, ENSMUST00000107154, OTTMUST00000052342
      Conserved Domains (1) summary
      pfam02301
      Location:23221
      HORMA; HORMA domain
    3. NM_001289537.1NP_001276466.1  HORMA domain-containing protein 1 isoform b

      See identical proteins and their annotated locations for NP_001276466.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a. Variants 2, 3, and 4 all encode the same isoform (b).
      Source sequence(s)
      AK016743, AK163995, BC051129
      Consensus CDS
      CCDS38547.1
      UniProtKB/Swiss-Prot
      Q9D5T7
      Related
      ENSMUSP00000127180, OTTMUSP00000070677, ENSMUST00000171191, OTTMUST00000052345
      Conserved Domains (1) summary
      pfam02301
      Location:23221
      HORMA; HORMA domain
    4. NM_026489.3NP_080765.1  HORMA domain-containing protein 1 isoform b

      See identical proteins and their annotated locations for NP_080765.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR, and in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a. Variants 2, 3, and 4 all encode the same isoform (b).
      Source sequence(s)
      AK016743, AV259564, AW552644
      Consensus CDS
      CCDS38547.1
      UniProtKB/Swiss-Prot
      Q9D5T7
      Related
      ENSMUSP00000088303, OTTMUSP00000024806, ENSMUST00000090797, OTTMUST00000052343
      Conserved Domains (1) summary
      pfam02301
      Location:23221
      HORMA; HORMA domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p3 C57BL/6J

      Range
      95559640..95587940
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006501955.2XP_006502018.1  

      Conserved Domains (1) summary
      pfam02301
      Location:55253
      HORMA; HORMA domain
    2. XM_006501954.2XP_006502017.1  

      Conserved Domains (1) summary
      pfam02301
      Location:55253
      HORMA; HORMA domain

    Alternate Mm_Celera

    Genomic

    1. AC_000025.1 Alternate Mm_Celera

      Range
      96991098..97019490
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)