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Slc6a9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 [ Mus musculus (house mouse) ]

Gene ID: 14664, updated on 18-Mar-2015
Official Symbol
Slc6a9provided by MGI
Official Full Name
solute carrier family 6 (neurotransmitter transporter, glycine), member 9provided by MGI
Primary source
MGI:MGI:95760
See related
Ensembl:ENSMUSG00000028542; Vega:OTTMUSG00000008656
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Glyt1; Glyt-1
Orthologs
See Slc6a9 in MapViewer
Location:
4 D2.1; 4 53.62 cM
Exon count:
16
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 4 NC_000070.6 (117835258..117869305)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (117507863..117541910)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105244666 Neighboring gene peptidylprolyl isomerase A pseudogene 4_1138.1 Neighboring gene uncharacterized LOC105244667 Neighboring gene coiled-coil domain containing 24 Neighboring gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 Neighboring gene ATPase, H+ transporting, lysosomal V0 subunit B

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
glycine transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
neurotransmitter:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 
sodium:amino acid symporter activity IEA
Inferred from Electronic Annotation
more info
 
symporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
L-alpha-amino acid transmembrane transport IDA
Inferred from Direct Assay
more info
PubMed 
amino acid transport IEA
Inferred from Electronic Annotation
more info
 
cation transmembrane transport IDA
Inferred from Direct Assay
more info
PubMed 
glycine transport IDA
Inferred from Direct Assay
more info
PubMed 
neurotransmitter transport IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IC
Inferred by Curator
more info
PubMed 
integral component of plasma membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
sodium- and chloride-dependent glycine transporter 1
Names
sodium- and chloride-dependent glycine transporter 1
glycine transporter 1
solute carrier family 6 member 9

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008135.4NP_032161.2  sodium- and chloride-dependent glycine transporter 1

    See identical proteins and their annotated locations for NP_032161.2

    Status: VALIDATED

    Source sequence(s)
    AL627128
    Consensus CDS
    CCDS18538.1
    UniProtKB/Swiss-Prot
    P28571
    Related
    ENSMUSP00000030269, OTTMUSP00000008988, ENSMUST00000030269, OTTMUST00000019609
    Conserved Domains (1) summary
    cd11498
    Location:11594
    SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p3 C57BL/6J

    Range
    117835258..117869305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011240445.1XP_011238747.1  

    See identical proteins and their annotated locations for XP_011238747.1

    Related
    ENSMUSP00000066102, OTTMUSP00000008989, ENSMUST00000063857, OTTMUST00000019611
    Conserved Domains (1) summary
    cd11498
    Location:11594
    SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain
  2. XM_006502771.1XP_006502834.1  

    Conserved Domains (1) summary
    cd11498
    Location:30613
    SLC6sbd_GlyT1; Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

RNA

  1. XR_867807.1 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000026.1 Alternate Mm_Celera

    Range
    116550328..116584414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)