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atp2a1 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 [ Danio rerio (zebrafish) ]

Gene ID: 260440, updated on 24-Jan-2015
Official Symbol
atp2a1provided by ZNC
Official Full Name
ATPase, Ca++ transporting, cardiac muscle, fast twitch 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-020905-1
See related
Ensembl:ENSDARG00000020574; Vega:OTTDARG00000032779
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
cb279; serca; serca1; zgc:92110; wu:cegs655; wu:fb17h11; wu:fb19b10
Annotation information
Annotation category: partial on reference assembly
Orthologs
See atp2a1 in MapViewer
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
104 current GRCz10 (GCF_000002035.5) 3 NC_007114.6 (26014163..26023607)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (26880629..26890073, complement)

Chromosome 3 - NC_007114.6Genomic Context describing neighboring genes Neighboring gene heat shock cognate 70-kd protein Neighboring gene uncharacterized LOC103910249 Neighboring gene rabaptin, RAB GTPase binding effector protein 2 Neighboring gene si:ch211-11k18.4

Markers

Homology

Clone Names

  • MGC92110

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATP binding ISS
Inferred from Sequence or Structural Similarity
more info
 
calcium ion binding ISS
Inferred from Sequence or Structural Similarity
more info
 
calcium-transporting ATPase activity IEA
Inferred from Electronic Annotation
more info
 
calcium-transporting ATPase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
ATP catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
calcium ion transmembrane transport ISS
Inferred from Sequence or Structural Similarity
more info
 
calcium ion transport IEA
Inferred from Electronic Annotation
more info
 
cellular calcium ion homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
ion transport IEA
Inferred from Electronic Annotation
more info
 
negative regulation of muscle contraction IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of striated muscle contraction ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of fast-twitch skeletal muscle fiber contraction ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of muscle contraction IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of striated muscle contraction ISS
Inferred from Sequence or Structural Similarity
more info
 
response to mechanical stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
H zone ISS
Inferred from Sequence or Structural Similarity
more info
 
I band ISS
Inferred from Sequence or Structural Similarity
more info
 
endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
endoplasmic reticulum-Golgi intermediate compartment ISS
Inferred from Sequence or Structural Similarity
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
perinuclear region of cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
sarcoplasmic reticulum ISS
Inferred from Sequence or Structural Similarity
more info
 
Preferred Names
sarcoplasmic/endoplasmic reticulum calcium ATPase 1
Names
sarcoplasmic/endoplasmic reticulum calcium ATPase 1
acc
accordion
sarcoendoplasmic reticulum calcium ATPase
NP_001007030.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007029.1NP_001007030.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 1

    See proteins identical to NP_001007030.1

    Status: PROVISIONAL

    Source sequence(s)
    AB178533
    UniProtKB/TrEMBL
    Q642Z0
    Related
    ENSDARP00000109874, OTTDARP00000036195, ENSDART00000129561, OTTDART00000045872
    Conserved Domains (6) summary
    pfam00122
    Location:93341
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:784987
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:472
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam12710
    Location:598712
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:418528
    Hydrolase_like2; Putative hydrolase of sodium-potassium ATPase alpha subunit
    TIGR01116
    Location:53989
    ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007114.6 

    Range
    26014163..26023607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)