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YIPF5 Yip1 domain family, member 5 [ Homo sapiens (human) ]

Gene ID: 81555, updated on 7-Dec-2014
Official Symbol
YIPF5provided by HGNC
Official Full Name
Yip1 domain family, member 5provided by HGNC
Primary source
HGNC:HGNC:24877
Locus tag
PP12723
See related
Ensembl:ENSG00000145817; HPRD:18071; MIM:611483; Vega:OTTHUMG00000129679
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SB140; SMAP5; YIP1A; SMAP-5; FinGER5
See YIPF5 in Epigenomics, MapViewer
Location:
5q31.3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 5 NC_000005.10 (144158159..144170714, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (143537723..143550278, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene TNF receptor-associated factor 4 pseudogene Neighboring gene histocompatibility (minor) HB-1 Neighboring gene potassium channel tetramerization domain containing 16 Neighboring gene CDC28 protein kinase regulatory subunit 1B pseudogene 5 Neighboring gene 60S ribosomal protein L9-like

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • DKFZp313L2216

Gene Ontology Provided by GOA

Process Evidence Code Pubs
protein transport IEA
Inferred from Electronic Annotation
more info
 
regulation of ER to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 
Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
protein YIPF5
Names
protein YIPF5
YIP1 family member 5
YPT-interacting protein 1 A
golgi membrane protein SB140
smooth muscle cell associated protein 5
smooth muscle cell-associated protein 5
five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024947.3NP_001020118.1  protein YIPF5 isoform a

    See proteins identical to NP_001020118.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1 and 2 encode the same protein (isoform a).
    Source sequence(s)
    AA811265, AY640926, AY640928, BP310538
    Consensus CDS
    CCDS4279.1
    UniProtKB/Swiss-Prot
    Q969M3
    Conserved Domains (2) summary
    COG5080
    Location:89257
    YIP1; Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
    cl09930
    Location:2992
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.
  2. NM_001271732.1NP_001258661.1  protein YIPF5 isoform b

    See proteins identical to NP_001258661.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon in the 5' coding region and uses a downstream start codon, compared to variant 1. It encodes isoform b which has a shorter N-terminus compared to isoform a.
    Source sequence(s)
    AA811265, AY640926, AY640929, BP310538
    Consensus CDS
    CCDS64277.1
    UniProtKB/Swiss-Prot
    Q969M3
    Conserved Domains (1) summary
    COG5080
    Location:35203
    YIP1; Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
  3. NM_030799.8NP_110426.4  protein YIPF5 isoform a

    See proteins identical to NP_110426.4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein (isoform a).
    Source sequence(s)
    AA811265, AY640926, BP310538
    Consensus CDS
    CCDS4279.1
    UniProtKB/Swiss-Prot
    Q969M3
    Related
    ENSP00000274496, OTTHUMP00000160087, ENST00000274496, OTTHUMT00000251882
    Conserved Domains (2) summary
    COG5080
    Location:89257
    YIP1; Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
    cl09930
    Location:2992
    RPA_2b-aaRSs_OBF_like; Replication protein A, class 2b aminoacyl-tRNA synthetases, and related proteins with oligonucleotide/oligosaccharide (OB) fold.

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000005.10 

    Range
    144158159..144170714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018916.2 

    Range
    142972246..142984802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HuRef

Genomic

  1. AC_000137.1 

    Range
    138685376..138697926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)