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bcd bicoid [ Drosophila melanogaster (fruit fly) ]

Gene ID: 40830, updated on 5-Apr-2015
Official Symbol
bcdprovided by FlyBase
Official Full Name
bicoidprovided by FlyBase
Primary source
FLYBASE:FBgn0000166
Locus tag
Dmel_CG1034
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Bcd; BCD; BG:DS00276.7; bic; CG1034; Dmel\CG1034; mum; prd4
See bcd in MapViewer
Location:
84A5-84A5; 3-48 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.01 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (6755842..6759466, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (2581564..2585188, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene CG34297 gene product from transcript CG34297-RA Neighboring gene zerknullt Neighboring gene ncRNA Neighboring gene Amalgam Neighboring gene ncRNA

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity IDA
Inferred from Direct Assay
more info
PubMed 
mRNA 3'-UTR binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
morphogen activity NAS
Non-traceable Author Statement
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding transcription factor activity IDA
Inferred from Direct Assay
more info
PubMed 
sequence-specific DNA binding transcription factor activity NAS
Non-traceable Author Statement
more info
 
translation regulator activity TAS
Traceable Author Statement
more info
PubMed 
translation repressor activity IGI
Inferred from Genetic Interaction
more info
PubMed 
Process Evidence Code Pubs
anterior region determination IMP
Inferred from Mutant Phenotype
more info
PubMed 
anterior/posterior axis specification TAS
Traceable Author Statement
more info
PubMed 
anterior/posterior axis specification, embryo NAS
Non-traceable Author Statement
more info
 
anterior/posterior axis specification, embryo TAS
Traceable Author Statement
more info
PubMed 
maternal determination of anterior/posterior axis, embryo NAS
Non-traceable Author Statement
more info
PubMed 
maternal determination of anterior/posterior axis, embryo TAS
Traceable Author Statement
more info
PubMed 
negative regulation of translation IGI
Inferred from Genetic Interaction
more info
PubMed 
negative regulation of translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of translation TAS
Traceable Author Statement
more info
PubMed 
oogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription from RNA polymerase II promoter NAS
Non-traceable Author Statement
more info
PubMed 
regulation of transcription, DNA-templated IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated NAS
Non-traceable Author Statement
more info
 
regulation of translation TAS
Traceable Author Statement
more info
PubMed 
segment polarity determination IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
nucleus IC
Inferred by Curator
more info
PubMed 
nucleus NAS
Non-traceable Author Statement
more info
 
Preferred Names
CG1034 gene product from transcript CG1034-RA
Names
CG1034-PA
CG1034-PD
CG1034-PE
CG1034-PF
CG1034-PG
PRD gene 4
bcd-PA
bcd-PD
bcd-PE
bcd-PF
bcd-PG
bicoid
multimorph

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    6755842..6759466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_057477.5NP_476825.1  bicoid, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_476825.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P09081
    Related
    FBpp0081164, FBtr0081664
  2. NM_169157.3NP_731111.1  bicoid, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_731111.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P09081
    Related
    FBpp0081165, FBtr0081665
    Conserved Domains (1) summary
    cd00086
    Location:103151
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
  3. NM_176410.3NP_788587.1  bicoid, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_788587.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P09081
    Related
    FBpp0081168, FBtr0081668
    Conserved Domains (1) summary
    cd00086
    Location:108156
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
  4. NM_176411.3NP_788588.1  bicoid, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_788588.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P09081
    Related
    FBpp0081167, FBtr0081667
    Conserved Domains (1) summary
    cd00086
    Location:2775
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
  5. NM_169159.4NP_731113.2  bicoid, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_731113.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P09081
    Related
    FBpp0081166, FBtr0081666
    Conserved Domains (1) summary
    cd00086
    Location:3280
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.