Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    CASC15 cancer susceptibility candidate 15 (non-protein coding) [ Homo sapiens (human) ]

    Gene ID: 401237, updated on 9-Jun-2016
    Official Symbol
    CASC15provided by HGNC
    Official Full Name
    cancer susceptibility candidate 15 (non-protein coding)provided by HGNC
    Primary source
    HGNC:HGNC:28245
    See related
    Ensembl:ENSG00000272168 MIM:616610
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC00340
    Location:
    6p22.3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    108 current GRCh38.p7 (GCF_000001405.33) 6 NC_000006.12 (21666444..22194400)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (21666675..22194629)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene bolA family member 2 pseudogene 3 Neighboring gene SRY-box 4 Neighboring gene uncharacterized LOC105374970 Neighboring gene RNA, 7SK small nuclear pseudogene 240 Neighboring gene neuroblastoma associated transcript 1 Neighboring gene uncharacterized LOC105374971 Neighboring gene prolactin Neighboring gene hepatoma derived growth factor-like 1

    NHGRI GWAS Catalog

    Description
    Chromosome 6p22 locus associated with clinically aggressive neuroblastoma.
    NHGRI GWA Catalog
    Common variation at 6q16 within HACE1 and LIN28B influences susceptibility to neuroblastoma.
    NHGRI GWA Catalog
    Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function.
    NHGRI GWA Catalog
    Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium.
    NHGRI GWA Catalog
    Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.
    NHGRI GWA Catalog
    Integrative genomics identifies LMO1 as a neuroblastoma oncogene.
    NHGRI GWA Catalog

    Markers

    Other Names

    • long intergenic non-protein coding RNA 340

    Clone Names

    • FLJ12803, FLJ17254, FLJ22536, FLJ51318

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015410.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK026189
      Related
      ENST00000606851

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p7 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p7 Primary Assembly

      Range
      21666444..22194400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.1

    Genomic

    1. NC_018917.2 Alternate CHM1_1.1

      Range
      21669276..22196747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)