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    rumi [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 326122, updated on 5-Jun-2016
    Official Symbol
    rumiprovided by FlyBase
    Primary source
    FLYBASE:FBgn0086253
    Locus tag
    Dmel_CG31152
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG17138; CG31152; Dmel\CG31152; Rumi
    Location:
    94C4-94C4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.07 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22749014..22750597, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (18574736..18576319, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene CG6985 gene product from transcript CG6985-RA Neighboring gene vreteno Neighboring gene CG17141 gene product from transcript CG17141-RA Neighboring gene CG31139 gene product from transcript CG31139-RC Neighboring gene Heterochromatin Protein 1c Neighboring gene Ubiquitin-specific protease 12/46 ortholog Neighboring gene CG7029 gene product from transcript CG7029-RC Neighboring gene CG4725 gene product from transcript CG4725-RA Neighboring gene CG4723 gene product from transcript CG4723-RA

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • Other types of O-glycan biosynthesis, organism-specific biosystem (from KEGG)
      Other types of O-glycan biosynthesis, organism-specific biosystemO-mannosyl glycans are a type of O-glycans that are found both in eukaryotes and prokaryotes. Biosynthesis of O-mannosyl glycans is initiated by the transfer of mannose from Man-P-Dol to serine or th...
    • Other types of O-glycan biosynthesis, conserved biosystem (from KEGG)
      Other types of O-glycan biosynthesis, conserved biosystemO-mannosyl glycans are a type of O-glycans that are found both in eukaryotes and prokaryotes. Biosynthesis of O-mannosyl glycans is initiated by the transfer of mannose from Man-P-Dol to serine or th...
    Products Interactant Other Gene Complex Source Pubs Description

    Homology

    • Homologs of the rumi gene: The rumi gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, mosquito, A.thaliana, and rice.

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    glucosyltransferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    Golgi organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Notch signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    negative regulation of Notch signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of Notch signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    protein glycosylation in endoplasmic reticulum IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of Notch signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
     
    regulation of stem cell division IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    rhabdomere development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    endomembrane system IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endoplasmic reticulum lumen IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    CG31152 gene product from transcript CG31152-RB
    Names
    CG31152-PA
    CG31152-PB
    rumi
    rumi-PA
    rumi-PB
    NP_001262849.1
    NP_651095.1

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      22749014..22750597 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275920.2NP_001262849.1  rumi, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262849.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KGR5
      Related
      FBpp0301743, FBtr0310040
      Conserved Domains (1) summary
      smart00672
      Location:44299
      CAP10; Putative lipopolysaccharide-modifying enzyme
    2. NM_142838.4NP_651095.1  rumi, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651095.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8T045
      Related
      FBpp0083713, FBtr0084320
      Conserved Domains (1) summary
      smart00672
      Location:139394
      CAP10; Putative lipopolysaccharide-modifying enzyme