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Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 [ Mus musculus (house mouse) ]

Gene ID: 20588, updated on 19-Dec-2014
Official Symbol
Smarcc1provided by MGI
Official Full Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1provided by MGI
Primary source
MGI:MGI:1203524
See related
Ensembl:ENSMUSG00000032481; Vega:OTTMUSG00000021083
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rsc8; SRG3; BAF155; AI115498
See Smarcc1 in Epigenomics, MapViewer
Location:
9 F2; 9
Exon count:
28
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 9 NC_000075.6 (110132024..110240178)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 4 Neighboring gene 60S ribosomal protein L7-like Neighboring gene DEAH (Asp-Glu-Ala-His) box polypeptide 30 Neighboring gene predicted gene 10615 Neighboring gene 4.5s RNA, pseudogene 2 Neighboring gene chondroitin sulfate proteoglycan 5

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
contributes_to RNA polymerase II core promoter proximal region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
contributes_to RNA polymerase II distal enhancer sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
contributes_to nucleosomal DNA binding ISO
Inferred from Sequence Orthology
more info
 
protein N-terminus binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
ATP-dependent chromatin remodeling ISO
Inferred from Sequence Orthology
more info
 
DNA packaging TAS
Traceable Author Statement
more info
PubMed 
chromatin modification IEA
Inferred from Electronic Annotation
more info
 
chromatin remodeling ISO
Inferred from Sequence Orthology
more info
 
insulin receptor signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of proteasomal ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of proteasomal ubiquitin-dependent protein catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
nucleosome disassembly ISO
Inferred from Sequence Orthology
more info
 
organ morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
BAF-type complex IDA
Inferred from Direct Assay
more info
PubMed 
SWI/SNF complex IDA
Inferred from Direct Assay
more info
PubMed 
SWI/SNF complex ISO
Inferred from Sequence Orthology
more info
 
SWI/SNF complex TAS
Traceable Author Statement
more info
PubMed 
XY body IDA
Inferred from Direct Assay
more info
PubMed 
intracellular IDA
Inferred from Direct Assay
more info
PubMed 
nBAF complex IDA
Inferred from Direct Assay
more info
PubMed 
npBAF complex IDA
Inferred from Direct Assay
more info
PubMed 
nuclear chromatin ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
protein complex ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
SWI/SNF complex subunit SMARCC1
Names
SWI/SNF complex subunit SMARCC1
SWI3-related protein
BRG1-associated factor 155
SWI/SNF complex 155 kDa subunit
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009211.2NP_033237.2  SWI/SNF complex subunit SMARCC1

    See proteins identical to NP_033237.2

    Status: VALIDATED

    Source sequence(s)
    AC159372, AI447890, AK143485, BC053064, CJ163551
    Consensus CDS
    CCDS23561.1
    UniProtKB/Swiss-Prot
    P97496
    UniProtKB/TrEMBL
    Q3UPK0
    Related
    ENSMUSP00000086094, OTTMUSP00000023185, ENSMUST00000088716, OTTMUST00000049879
    Conserved Domains (3) summary
    COG5259
    Location:443709
    RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    cd00024
    Location:213250
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam04433
    Location:448536
    SWIRM; SWIRM domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000075.6 

    Range
    110132024..110240178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000031.1 

    Range
    109860346..109968637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)