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    flr fleer [ Danio rerio (zebrafish) ]

    Gene ID: 797829, updated on 22-Aug-2016
    Official Symbol
    flrprovided by ZNC
    Official Full Name
    fleerprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070117-2066
    See related
    Ensembl:ENSDARG00000038024 Vega:OTTDARG00000037452
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    ttc30; ttc30a
    Location:
    chromosome: 3
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    105 current GRCz10 (GCF_000002035.5) 3 NC_007114.6 (28700690..28720056)
    103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (28982643..29002017)

    Chromosome 3 - NC_007114.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101885472 Neighboring gene uncharacterized LOC101885529 Neighboring gene si:ch211-76l23.4 Neighboring gene si:ch211-76l23.7 Neighboring gene ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase Neighboring gene eukaryotic elongation factor 2 lysine methyltransferase Neighboring gene uncharacterized LOC101885742

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    tubulin-glycine ligase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Process Evidence Code Pubs
    cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    cilium assembly IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cilium morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    determination of left/right symmetry IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    establishment of planar polarity IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    intraciliary transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    opsin transport IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    protein polyglutamylation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    axonemal microtubule IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    cilium IEA
    Inferred from Electronic Annotation
    more info
     
    intraciliary transport particle B IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    motile cilium IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    tetratricopeptide repeat protein 30A
    Names
    DYF-1
    IFT70
    TPR repeat protein 30
    TPR repeat protein 30A
    protein fleer
    tetratricopeptide repeat protein 30

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001104649.2NP_001098119.2  tetratricopeptide repeat protein 30A

      See identical proteins and their annotated locations for NP_001098119.2

      Status: VALIDATED

      Source sequence(s)
      BX510989
      UniProtKB/Swiss-Prot
      A7YE96
      Related
      ENSDARP00000055421, OTTDARP00000042048, ENSDART00000055422, OTTDART00000053456
      Conserved Domains (4) summary
      pfam13414
      Location:138202
      TPR_11; TPR repeat
      pfam14559
      Location:1884
      TPR_19; Tetratricopeptide repeat
      pfam14961
      Location:506644
      BROMI; Broad-minded protein
      sd00006
      Location:173202
      TPR; TPR repeat [structural motif]

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007114.6 Reference GRCz10 Primary Assembly

      Range
      28700690..28720056
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)