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Muc5ac mucin 5, subtypes A and C, tracheobronchial/gastric [ Mus musculus (house mouse) ]

Gene ID: 17833, updated on 19-Sep-2014
Official Symbol
Muc5acprovided by MGI
Official Full Name
mucin 5, subtypes A and C, tracheobronchial/gastricprovided by MGI
Primary source
MGI:MGI:104697
See related
Ensembl:ENSMUSG00000037974
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MGM; 2210005L13Rik
See Muc5ac in Epigenomics, MapViewer
Location:
7 F5; 7 87.23 cM
Exon count:
50
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 7 NC_000073.6 (141788958..141819226)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene mucin 2 Neighboring gene mucin 2 Neighboring gene mucin 5, subtype B, tracheobronchial Neighboring gene uncharacterized LOC102635049 Neighboring gene toll interacting protein

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
extracellular fibril organization ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space ISO
Inferred from Sequence Orthology
more info
 
extracellular vesicular exosome ISO
Inferred from Sequence Orthology
more info
 
fibril ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
mucin 5, subtypes A and C, tracheobronchial/gastric
Names
mucin 5, subtypes A and C, tracheobronchial/gastric
gastric mucin

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010844.1NP_034974.1  mucin 5, subtypes A and C, tracheobronchial/gastric precursor

    Status: VALIDATED

    Source sequence(s)
    AJ010792, AJ511870, AJ511871
    Consensus CDS
    CCDS40189.1
    UniProtKB/TrEMBL
    E9PWB6
    Related
    ENSMUSP00000039699, ENSMUST00000041924
    Conserved Domains (7) summary
    smart00041
    Location:26362708
    CT; C-terminal cystine knot-like domain (CTCK)
    smart00216
    Location:8901049
    VWD; von Willebrand factor (vWF) type D domain
    smart00832
    Location:622692
    C8; This domain contains 8 conserved cysteine residues
    pfam00094
    Location:80226
    VWD; von Willebrand factor type D domain
    pfam01826
    Location:337393
    TIL; Trypsin Inhibitor like cysteine rich domain
    pfam08742
    Location:10861160
    C8; C8 domain
    pfam13330
    Location:16041691
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000073.6 

    Range
    141788958..141819226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508499.1XP_006508562.1  

    Conserved Domains (7) summary
    smart00041
    Location:33443416
    CT; C-terminal cystine knot-like domain (CTCK)
    smart00216
    Location:8951054
    VWD; von Willebrand factor (vWF) type D domain
    smart00832
    Location:627697
    C8; This domain contains 8 conserved cysteine residues
    pfam00094
    Location:84230
    VWD; von Willebrand factor type D domain
    pfam01826
    Location:341397
    TIL; Trypsin Inhibitor like cysteine rich domain
    pfam08742
    Location:10911165
    C8; C8 domain
    pfam13330
    Location:16091696
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
  2. XM_006508501.1XP_006508564.1  

    Conserved Domains (7) summary
    smart00041
    Location:32963368
    CT; C-terminal cystine knot-like domain (CTCK)
    smart00216
    Location:8951054
    VWD; von Willebrand factor (vWF) type D domain
    smart00832
    Location:627697
    C8; This domain contains 8 conserved cysteine residues
    pfam00094
    Location:84230
    VWD; von Willebrand factor type D domain
    pfam01826
    Location:341397
    TIL; Trypsin Inhibitor like cysteine rich domain
    pfam08742
    Location:10911165
    C8; C8 domain
    pfam13330
    Location:16091696
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
  3. XM_006508502.1XP_006508565.1  

    Conserved Domains (7) summary
    smart00041
    Location:32803352
    CT; C-terminal cystine knot-like domain (CTCK)
    smart00216
    Location:8951054
    VWD; von Willebrand factor (vWF) type D domain
    smart00832
    Location:627697
    C8; This domain contains 8 conserved cysteine residues
    pfam00094
    Location:84230
    VWD; von Willebrand factor type D domain
    pfam01826
    Location:341397
    TIL; Trypsin Inhibitor like cysteine rich domain
    pfam08742
    Location:10911165
    C8; C8 domain
    pfam13330
    Location:16091696
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
  4. XM_006508503.1XP_006508566.1  

    Conserved Domains (7) summary
    smart00041
    Location:32803352
    CT; C-terminal cystine knot-like domain (CTCK)
    smart00216
    Location:8951054
    VWD; von Willebrand factor (vWF) type D domain
    smart00832
    Location:627697
    C8; This domain contains 8 conserved cysteine residues
    pfam00094
    Location:84230
    VWD; von Willebrand factor type D domain
    pfam01826
    Location:341397
    TIL; Trypsin Inhibitor like cysteine rich domain
    pfam08742
    Location:10911165
    C8; C8 domain
    pfam13330
    Location:16091696
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region
  5. XM_006508500.1XP_006508563.1  

    Conserved Domains (7) summary
    smart00041
    Location:33123384
    CT; C-terminal cystine knot-like domain (CTCK)
    smart00216
    Location:8951054
    VWD; von Willebrand factor (vWF) type D domain
    smart00832
    Location:627697
    C8; This domain contains 8 conserved cysteine residues
    pfam00094
    Location:84230
    VWD; von Willebrand factor type D domain
    pfam01826
    Location:341397
    TIL; Trypsin Inhibitor like cysteine rich domain
    pfam08742
    Location:10911165
    C8; C8 domain
    pfam13330
    Location:16091696
    Mucin2_WxxW; Mucin-2 protein WxxW repeating region

Alternate Mm_Celera

Genomic

  1. AC_000029.1 

    Range
    141544129..141573772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)