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    Ccrn4l CCR4 carbon catabolite repression 4-like (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 12457, updated on 27-Jun-2015
    Official Symbol
    Ccrn4lprovided by MGI
    Official Full Name
    CCR4 carbon catabolite repression 4-like (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:109382
    See related
    Ensembl:ENSMUSG00000023087; Vega:OTTMUSG00000027519
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ccr4; AU043840; nocturnin
    Orthologs
    See Ccrn4l in Epigenomics, MapViewer
    Location:
    3; 3 B-D
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 3 NC_000069.6 (51224447..51251654)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (51028369..51055576)

    Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35891 Neighboring gene predicted gene, 40044 Neighboring gene RIKEN cDNA 4930577N17 gene Neighboring gene E74-like factor 2 Neighboring gene predicted gene, 40045

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nuclease activity IEA
    Inferred from Electronic Annotation
    more info
     
    poly(A)-specific ribonuclease activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    poly(A)-specific ribonuclease activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    RNA phosphodiester bond hydrolysis, exonucleolytic IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    circadian regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cytoplasmic mRNA processing body assembly IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    deadenylation-dependent decapping of nuclear-transcribed mRNA IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA stabilization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of osteoblast differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    positive regulation of fat cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of embryonic development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    response to extracellular stimulus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    response to lipopolysaccharide IDA
    Inferred from Direct Assay
    more info
    PubMed 
    rhythmic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasmic mRNA processing body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    nocturnin
    Names
    nocturnin
    CCR4 protein homolog
    carbon catabolite repression 4 homolog
    carbon catabolite repression 4-like protein
    circadian deadenylase NOC
    NP_033964.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009834.2NP_033964.1  nocturnin

      See identical proteins and their annotated locations for NP_033964.1

      Status: VALIDATED

      Source sequence(s)
      AK084516, AK087790, BB261546
      Consensus CDS
      CCDS17336.1
      UniProtKB/TrEMBL
      B2RTJ8
      UniProtKB/Swiss-Prot
      O35710
      Related
      ENSMUSP00000023849, OTTMUSP00000034381, ENSMUST00000023849, OTTMUST00000068124
      Conserved Domains (1) summary
      cd09096
      Location:142421
      Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000069.6 Reference GRCm38.p3 C57BL/6J

      Range
      51224447..51251654
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006500956.1XP_006501019.1  

      Conserved Domains (1) summary
      cd09096
      Location:85364
      Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

    Alternate Mm_Celera

    Genomic

    1. AC_000025.1 Alternate Mm_Celera

      Range
      50951510..50978573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)