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    SFVgp1 Nonstructural polyprotein [ Semliki forest virus ]

    Gene ID: 922350, updated on 26-Jun-2015
    Gene symbol
    SFVgp1
    Gene description
    Nonstructural polyprotein
    Locus tag
    SFVgp1
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Semliki forest virus
    Lineage
    Viruses; ssRNA positive-strand viruses, no DNA stage; Togaviridae; Alphavirus; SFV complex
    Sequence:
    NC_003215.1 (86..7381)

    NC_003215.1Genomic Context describing neighboring genes Neighboring gene Truncated verstion of structural polyprotein that will be produced when frameshifting occurs at nt 9831 Neighboring gene Structural polyprotein

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Miscellaneous features

    • Loc: 5225-5248 imperfect repeat 1
    • Loc: 5267-5290 imperfect repeat 1
    • Loc: 5378-5389 imperfect repeat 2
    • Loc: 5399-5410 imperfect repeat 2
    • Loc: 5438-5455 imperfect repeat 3
    • Loc: 5489-5506 imperfect repeat 3
    Names
    Nonstructural polyprotein
    Nonstructural protein nsP1
    NTPase
    Nonstructural protein nsP3
    Nonstructural protein nsP4
    Nonstructural protein P123
    NP_463457.1
    • (aa 1-2431)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003215.1 Reference assembly

      Range
      86..7381
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_463457.1 Nonstructural polyprotein [Semliki forest virus]

      See identical proteins and their annotated locations for NP_463457.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P08411
      Conserved Domains (6) summary
      pfam01707
      Location:9661167
      Peptidase_C9; Peptidase family C9
      pfam00978
      Location:19682416
      RdRP_2; RNA dependent RNA polymerase
      pfam01443
      Location:721953
      Viral_helicase1; Viral (Superfamily 1) RNA helicase
      pfam01660
      Location:17381
      Vmethyltransf; Viral methyltransferase
      pfam01661
      Location:13611460
      Macro; Macro domain
      pfam13401
      Location:721819
      AAA_22; AAA domain
    2. NP_740665.1 Nonstructural protein nsP1

      Conserved Domains (1) summary
      pfam01660
      Location:17381
      Vmethyltransf; Viral methyltransferase
    3. NP_740666.1 NTPase

      Conserved Domains (3) summary
      pfam01707
      Location:429630
      Peptidase_C9; Peptidase family C9
      pfam01443
      Location:184416
      Viral_helicase1; Viral (Superfamily 1) RNA helicase
      pfam13401
      Location:184282
      AAA_22; AAA domain
    4. NP_740667.1 Nonstructural protein nsP3

      Conserved Domains (1) summary
      pfam01661
      Location:26125
      Macro; Macro domain
    5. NP_740668.1 Nonstructural protein nsP4

      Conserved Domains (1) summary
      pfam00978
      Location:151599
      RdRP_2; RNA dependent RNA polymerase
    6. NP_819009.1 Nonstructural protein P123

      Conserved Domains (5) summary
      pfam01707
      Location:9661167
      Peptidase_C9; Peptidase family C9
      pfam01443
      Location:721953
      Viral_helicase1; Viral (Superfamily 1) RNA helicase
      pfam01660
      Location:17381
      Vmethyltransf; Viral methyltransferase
      pfam01661
      Location:13611460
      Macro; Macro domain
      pfam13401
      Location:721819
      AAA_22; AAA domain