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ARAD1 putative glycosyltransferase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818076, updated on 14-Jun-2014
Gene symbol
ARAD1
Gene description
putative glycosyltransferase
Primary source
TAIR:AT2G35100
Locus tag
AT2G35100
Gene type
protein coding
RNA name
putative glycosyltransferase
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABINAN DEFICIENT 1; ARABINOSYLTRANSFERASE; ARAD1; T4C15.23; T4C15_23
Summary
Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.
See ARAD1 in MapViewer
Location:
chromosome: 2
Exon count :
3
Sequence:
Chromosome: 2; NC_003071.7 (14793651..14795629, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ATP binding / aminoacyl-tRNA ligase/ nucleotide binding protein Neighboring gene hypothetical protein Neighboring gene protein NAP1 Neighboring gene glycine cleavage system H protein 2

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
catalytic activity ISS
Inferred from Sequence or Structural Similarity
more info
 
transferase activity, transferring glycosyl groups ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
pectin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus IDA
Inferred from Direct Assay
more info
 
Golgi apparatus ISM
Inferred from Sequence Model
more info
 
endosome IDA
Inferred from Direct Assay
more info
 
membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
trans-Golgi network IDA
Inferred from Direct Assay
more info
 
Names
putative glycosyltransferase
NP_850241.1
  • ARABINAN DEFICIENT 1 (ARAD1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, catalytic activity; INVOLVED IN: pectin biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT5G44930.2); Has 1290 Blast hits to 1285 proteins in 106 species: Archae - 0; Bacteria - 8; Metazoa - 193; Fungi - 4; Plants - 1016; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 

    Range
    14793651..14795629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179910.2NP_850241.1  putative glycosyltransferase [Arabidopsis thaliana]

    See proteins identical to NP_850241.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6DBG8
    Conserved Domains (1) summary
    pfam03016
    Location:56371
    Blast Score: 666
    Exostosin; Exostosin family

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