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foxi1 forkhead box i1 [ Danio rerio (zebrafish) ]

Gene ID: 353313, updated on 14-Dec-2014
Official Symbol
foxi1provided by ZNC
Official Full Name
forkhead box i1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030505-1
See related
Ensembl:ENSDARG00000019659; Vega:OTTDARG00000033842
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
foo; cb724
See foxi1 in MapViewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
104 current GRCz10 (GCF_000002035.5) 12 NC_007123.6 (43916243..43917947, complement)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (2302337..2304041)

Chromosome 12 - NC_007123.6Genomic Context describing neighboring genes Neighboring gene chromosome 12 open reading frame, human C10orf90 Neighboring gene uncharacterized LOC101884222 Neighboring gene zgc:112964 Neighboring gene uncharacterized LOC100536599

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding transcription factor activity IDA
Inferred from Direct Assay
more info
PubMed 
sequence-specific DNA binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cranial ganglion development IMP
Inferred from Mutant Phenotype
more info
PubMed 
ectodermal placode formation IGI
Inferred from Genetic Interaction
more info
PubMed 
embryonic viscerocranium morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
epidermal cell fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
lateral line ganglion development IMP
Inferred from Mutant Phenotype
more info
PubMed 
neural crest cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
otic placode formation IGI
Inferred from Genetic Interaction
more info
PubMed 
otic placode formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
otic vesicle development IMP
Inferred from Mutant Phenotype
more info
PubMed 
otic vesicle formation IGI
Inferred from Genetic Interaction
more info
PubMed 
otic vesicle formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
otic vesicle morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
forkhead box i1
Names
forkhead box i1
hsy
nos
quadro
quo(l)
hearsay
no soul

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_181735.1NP_859424.1  forkhead box i1

    See proteins identical to NP_859424.1

    Status: PROVISIONAL

    Source sequence(s)
    AY204207
    UniProtKB/TrEMBL
    Q804B2
    Related
    ENSDARP00000023342, OTTDARP00000037457, ENSDART00000004477, OTTDART00000047696
    Conserved Domains (1) summary
    cd00059
    Location:141218
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz10 Primary Assembly

Genomic

  1. NC_007123.6 

    Range
    43916243..43917947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)