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    RHO rhodopsin [ Bos taurus (cattle) ]

    Gene ID: 509933, updated on 8-Aug-2016
    Gene symbol
    RHO
    Gene description
    rhodopsin
    See related
    BGD:BT14158; Ensembl:ENSBTAG00000001310
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    Location:
    22q23-q24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    105 current Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 22 AC_000179.1 (56867887..56872817, complement)

    Chromosome 22 - AC_000179.1Genomic Context describing neighboring genes Neighboring gene plexin D1 Neighboring gene H1 histone family, member O, oocyte-specific Neighboring gene intraflagellar transport 122 Neighboring gene methyl-CpG binding domain 4, DNA glycosylase

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    G-protein coupled photoreceptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    guanyl-nucleotide exchange factor activity TAS
    Traceable Author Statement
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    absorption of visible light IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cellular response to light stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    photoreceptor cell maintenance IEA
    Inferred from Electronic Annotation
    more info
     
    phototransduction, visible light IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    protein-chromophore linkage IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of rhodopsin mediated signaling pathway TAS
    Traceable Author Statement
    more info
     
    retina development in camera-type eye IEA
    Inferred from Electronic Annotation
    more info
     
    rhodopsin mediated signaling pathway TAS
    Traceable Author Statement
    more info
     
    visual perception IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi membrane TAS
    Traceable Author Statement
    more info
     
    cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    photoreceptor disc membrane TAS
    Traceable Author Statement
    more info
     
    photoreceptor inner segment membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    photoreceptor outer segment IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    photoreceptor outer segment membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    plasma membrane TAS
    Traceable Author Statement
    more info
     
    Preferred Names
    rhodopsin
    Names
    rhodopsin (opsin 2, rod pigment) (retinitis pigmentosa 4, autosomal dominant)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014890.2NP_001014890.1  rhodopsin

      See identical proteins and their annotated locations for NP_001014890.1

      Status: VALIDATED

      Source sequence(s)
      DAAA02054571
      UniProtKB/Swiss-Prot
      P02699
      Related
      ENSBTAP00000001730, ENSBTAT00000001730
      Conserved Domains (3) summary
      pfam10413
      Location:237
      Rhodopsin_N; Amino terminal of the G-protein receptor rhodopsin
      pfam00001
      Location:60306
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:45323
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 105 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bos_taurus_UMD_3.1.1 Primary Assembly

    Genomic

    1. AC_000179.1 Reference Bos_taurus_UMD_3.1.1 Primary Assembly

      Range
      56867887..56872817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Btau_5.0.1

    Genomic

    1. NC_007320.6 Alternate Btau_5.0.1

      Range
      57087444..57092374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)