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    pol4 DNA polymerase X family [ Schizosaccharomyces pombe 972h- ]

    Gene ID: 2541638, updated on 5-Jun-2016
    Gene symbol
    pol4
    Gene description
    DNA polymerase X family
    Primary source
    PomBase:SPAC2F7.06c
    Locus tag
    SPAC2F7.06c
    Gene type
    protein coding
    RNA name
    DNA polymerase X family
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe 972h- (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    See pol4 in Map Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (541576..543735, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene DYRK family protein kinase Pom1 Neighboring gene mediator complex subunit Pmc2/Med1 Neighboring gene eukaryotic translation initiation factor 5 Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene Clr6 histone deacetylase associated PHD protein-2 Cph2 Neighboring gene SWI/SNF complex subunit Snf5

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • Non-homologous end-joining, organism-specific biosystem (from KEGG)
      Non-homologous end-joining, organism-specific biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
    • Non-homologous end-joining, conserved biosystem (from KEGG)
      Non-homologous end-joining, conserved biosystemNonhomologous end joining (NHEJ) eliminates DNA double-strand breaks (DSBs) by direct ligation. NHEJ involves binding of the KU heterodimer to double-stranded DNA ends, recruitment of DNA-PKcs (MRX c...
    Products Interactant Other Gene Complex Source Pubs Description

    3'UTR

    • Loc: c542036-541576

    5'UTR

    • Loc: c543735-543558

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    NOT 3'-5' exonuclease activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    5'-deoxyribose-5-phosphate lyase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA primase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    DNA-directed DNA polymerase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      541576..543735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018377.2NP_592977.1  DNA polymerase X family [Schizosaccharomyces pombe 972h-]

      See identical proteins and their annotated locations for NP_592977.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q09693
      Conserved Domains (2) summary
      cd00141
      Location:180503
      NT_POLXc; Nucleotidyltransferase (NT) domain of family X DNA Polymerases
      smart00483
      Location:177504
      POLXc; DNA polymerase X family