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PUB1 Pub1p [ Saccharomyces cerevisiae S288c ]

Gene ID: 855716, updated on 14-Dec-2014
Gene symbol
PUB1
Gene description
Pub1p
Primary source
SGD:S000004961
Locus tag
YNL016W
Gene type
protein coding
RNA name
Pub1p
RefSeq status
PROVISIONAL
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
RNP1
See PUB1 in MapViewer
Location:
chromosome: XIV
Exon count:
1
Sequence:
Chromosome: XIV; NC_001146.8 (602907..604268)

Chromosome XIV - NC_001146.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene tRNA Neighboring gene Pbi2p Neighboring gene translation elongation factor EF-3

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
mRNA binding IMP
Inferred from Mutant Phenotype
more info
PubMed 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
poly(U) RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IDA
Inferred from Direct Assay
more info
PubMed 
regulation of mRNA stability IMP
Inferred from Mutant Phenotype
more info
PubMed 
stress granule assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic mRNA processing body IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Names
Pub1p
NP_014382.1
  • Poly (A)+ RNA-binding protein; abundant mRNP-component protein that binds mRNA and is required for stability of many mRNAs; component of glucose deprivation induced stress granules, involved in P-body-dependent granule assembly; protein abundance increases in response to DNA replication stress

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001146.8 

    Range
    602907..604268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001182855.1NP_014382.1  Pub1p [Saccharomyces cerevisiae S288c]

    See proteins identical to NP_014382.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P32588
    Conserved Domains (4) summary
    COG0724
    Location:321440
    COG0724; RNA-binding proteins (RRM domain) [General function prediction only]
    cd12614
    Location:77150
    RRM1_PUB1; RNA recognition motif 1 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins
    cd12619
    Location:163237
    RRM2_PUB1; RNA recognition motif 2 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins
    cd12622
    Location:341414
    RRM3_PUB1; RNA recognition motif 3 in yeast nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 and similar proteins