Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    Nectin1 nectin cell adhesion molecule 1 [ Mus musculus (house mouse) ]

    Gene ID: 58235, updated on 13-Aug-2016
    Official Symbol
    Nectin1provided by MGI
    Official Full Name
    nectin cell adhesion molecule 1provided by MGI
    Primary source
    MGI:MGI:1926483
    See related
    Ensembl:ENSMUSG00000032012
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PRR; HIgR; HveC; PRR1; Cd111; Pvrl1; AI835281; AW549174; nectin-1
    Orthologs
    Location:
    9; 9 B
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (43744576..43807461)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (43552659..43615544)

    Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene spermidine synthase pseudogene Neighboring gene predicted gene, 30015 Neighboring gene uncharacterized LOC102631930 Neighboring gene uncharacterized LOC108167645 Neighboring gene predicted gene 3898 Neighboring gene predicted gene, 39322

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    carbohydrate binding ISO
    Inferred from Sequence Orthology
    more info
     
    cell adhesion molecule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    cell adhesion molecule binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein heterodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    receptor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    virion binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    axon guidance ISO
    Inferred from Sequence Orthology
    more info
     
    camera-type eye morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    cell recognition IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    desmosome organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enamel mineralization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IDA
    Inferred from Direct Assay
    more info
    PubMed 
    homophilic cell adhesion via plasma membrane adhesion molecules IDA
    Inferred from Direct Assay
    more info
    PubMed 
    iron ion transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    lens morphogenesis in camera-type eye IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein localization to cell junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of synapse assembly ISO
    Inferred from Sequence Orthology
    more info
     
    retina development in camera-type eye IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    single organismal cell-cell adhesion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    viral entry into host cell ISO
    Inferred from Sequence Orthology
    more info
     
    viral process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    adherens junction IEA
    Inferred from Electronic Annotation
    more info
     
    apical junction complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    axon ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with catenin complex ISO
    Inferred from Sequence Orthology
    more info
     
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    cell-cell adherens junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell-cell adherens junction ISO
    Inferred from Sequence Orthology
    more info
     
    cell-cell contact zone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    growth cone membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    integral component of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    neuron projection ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    synapse ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    nectin-1
    Names
    herpes virus entry mediator C
    herpesvirus entry mediator C
    nectin-1 alpha
    nectin-1 delta
    poliovirus receptor-related 1
    poliovirus receptor-related protein 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_021424.2NP_067399.2  nectin-1 precursor

      See identical proteins and their annotated locations for NP_067399.2

      Status: PROVISIONAL

      Source sequence(s)
      BC060694
      Consensus CDS
      CCDS23092.1
      UniProtKB/Swiss-Prot
      Q9JKF6
      Related
      ENSMUSP00000034510, ENSMUST00000034510
      Conserved Domains (5) summary
      cd05886
      Location:45143
      Ig1_Nectin-1_like; First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins
      cd05890
      Location:146243
      Ig2_Nectin-1_like; Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins
      smart00408
      Location:263323
      IGc2; Immunoglobulin C-2 Type
      cd12087
      Location:353382
      TM_EGFR-like; Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine Kinases
      smart00410
      Location:38142
      IG_like; Immunoglobulin like

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

      Range
      43744576..43807461
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)