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Smap1 small ArfGAP 1 [ Mus musculus (house mouse) ]

Gene ID: 98366, updated on 8-Dec-2014
Official Symbol
Smap1provided by MGI
Official Full Name
small ArfGAP 1provided by MGI
Primary source
MGI:MGI:2138261
See related
Ensembl:ENSMUSG00000026155; Vega:OTTMUSG00000026521
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI462175; 1700056O10Rik; 4921514B13Rik; 4921525H11Rik
See Smap1 in Epigenomics, MapViewer
Location:
1 A5; 1
Exon count:
12
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 1 NC_000067.6 (23845625..23922450, complement)

Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 19673 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) Neighboring gene RIKEN cDNA 1110058L19 gene Neighboring gene family with sequence similarity 135, member A Neighboring gene predicted gene, 30756

  • Endocytosis, organism-specific biosystem (from KEGG)
    Endocytosis, organism-specific biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
  • Endocytosis, conserved biosystem (from KEGG)
    Endocytosis, conserved biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ARF GTPase activator activity IDA
Inferred from Direct Assay
more info
PubMed 
GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 
clathrin binding IDA
Inferred from Direct Assay
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
stromal membrane-associated protein 1
Names
stromal membrane-associated protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290683.1NP_001277612.1  stromal membrane-associated protein 1 isoform 2

    See proteins identical to NP_001277612.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded protein (isoform 2) has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AI846174, AK006817, AK014966, AK132868, BC080286
    Consensus CDS
    CCDS69870.1
    UniProtKB/TrEMBL
    D3YVX4
    UniProtKB/Swiss-Prot
    Q91VZ6
    Conserved Domains (1) summary
    pfam09770
    Location:123348
    PAT1; Topoisomerase II-associated protein PAT1
  2. NM_028534.3NP_082810.1  stromal membrane-associated protein 1 isoform 1

    See proteins identical to NP_082810.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
    Source sequence(s)
    AI846174, AK014966, AK132868, BC080286, BC100537, CJ062632
    Consensus CDS
    CCDS14851.1
    UniProtKB/Swiss-Prot
    Q91VZ6
    Related
    ENSMUSP00000027339, OTTMUSP00000032714, ENSMUST00000027339, OTTMUST00000065602
    Conserved Domains (1) summary
    pfam01412
    Location:20120
    ArfGap; Putative GTPase activating protein for Arf

RNA

  1. NR_110972.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' and 3' structure, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC121857, AK132868, BE631392

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000067.6 

    Range
    23845625..23922450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496362.1XP_006496425.1  

    Conserved Domains (1) summary
    pfam01412
    Location:20120
    ArfGap; Putative GTPase activating protein for Arf
  2. XM_006496363.1XP_006496426.1  

    Conserved Domains (1) summary
    pfam09770
    Location:123348
    PAT1; Topoisomerase II-associated protein PAT1

Alternate Mm_Celera

Genomic

  1. AC_000023.1 

    Range
    23682793..23728564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)