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    Smap1 small ArfGAP 1 [ Mus musculus (house mouse) ]

    Gene ID: 98366, updated on 5-Jul-2015
    Official Symbol
    Smap1provided by MGI
    Official Full Name
    small ArfGAP 1provided by MGI
    Primary source
    MGI:MGI:2138261
    See related
    Ensembl:ENSMUSG00000026155; Vega:OTTMUSG00000026521
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI462175; 1700056O10Rik; 4921514B13Rik; 4921525H11Rik
    Orthologs
    See Smap1 in Epigenomics, MapViewer
    Location:
    1; 1 A5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 1 NC_000067.6 (23844825..23922450, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (23852466..23929128, complement)

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene 28822 Neighboring gene beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) Neighboring gene predicted gene, 38672 Neighboring gene predicted gene, 26524 Neighboring gene succinate dehydrogenase complex assembly factor 4 Neighboring gene family with sequence similarity 135, member A Neighboring gene predicted gene, 30756

    • Endocytosis, organism-specific biosystem (from KEGG)
      Endocytosis, organism-specific biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
    • Endocytosis, conserved biosystem (from KEGG)
      Endocytosis, conserved biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTPase activator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    clathrin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    stromal membrane-associated protein 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001290683.1NP_001277612.1  stromal membrane-associated protein 1 isoform 2

      See identical proteins and their annotated locations for NP_001277612.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream start codon, compared to variant 1. The encoded protein (isoform 2) has a shorter N-terminus, compared to isoform 1.
      Source sequence(s)
      AI846174, AK006817, AK014966, AK132868, BC080286
      Consensus CDS
      CCDS69870.1
      UniProtKB/TrEMBL
      D3YVX4
      UniProtKB/Swiss-Prot
      Q91VZ6
      Conserved Domains (1) summary
      pfam09770
      Location:123348
      PAT1; Topoisomerase II-associated protein PAT1
    2. NM_028534.3NP_082810.1  stromal membrane-associated protein 1 isoform 1

      See identical proteins and their annotated locations for NP_082810.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
      Source sequence(s)
      AI846174, AK014966, AK132868, BC080286, BC100537, CJ062632
      Consensus CDS
      CCDS14851.1
      UniProtKB/Swiss-Prot
      Q91VZ6
      Related
      ENSMUSP00000027339, OTTMUSP00000032714, ENSMUST00000027339, OTTMUST00000065602
      Conserved Domains (1) summary
      pfam01412
      Location:20120
      ArfGap; Putative GTPase activating protein for Arf

    RNA

    1. NR_110972.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' and 3' structure, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AC121857, AK132868, BE631392

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p3 C57BL/6J

      Range
      23844825..23922450
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496362.1XP_006496425.1  

      Conserved Domains (1) summary
      pfam01412
      Location:20120
      ArfGap; Putative GTPase activating protein for Arf

    Alternate Mm_Celera

    Genomic

    1. AC_000023.1 Alternate Mm_Celera

      Range
      23681963..23746152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)