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    hlx1 H2.0-like homeo box 1 (Drosophila) [ Danio rerio (zebrafish) ]

    Gene ID: 327096, updated on 27-Jun-2016
    Official Symbol
    hlx1provided by ZNC
    Official Full Name
    H2.0-like homeo box 1 (Drosophila)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5304
    See related
    Ensembl:ENSDARG00000009134 Vega:OTTDARG00000028849
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    fa28a07; zgc:76923; wu:fa28a07
    Orthologs
    Location:
    chromosome: 20
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    105 current GRCz10 (GCF_000002035.5) 20 NC_007131.6 (52383618..52390295, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 20 NC_007131.5 (52535163..52538958, complement)

    Chromosome 20 - NC_007131.6Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 10 Neighboring gene uncharacterized LOC108180230 Neighboring gene rhophilin, Rho GTPase binding protein 1 Neighboring gene uncharacterized LOC108180336 Neighboring gene nicotinate phosphoribosyltransferase

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    sprouting angiogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212701.1NP_997866.1  H2.0-like homeobox protein

      See identical proteins and their annotated locations for NP_997866.1

      Status: PROVISIONAL

      Source sequence(s)
      BC066687
      UniProtKB/TrEMBL
      Q6NY96
      Related
      ENSDARP00000116160, OTTDARP00000031578, ENSDART00000131806, OTTDART00000039479
      Conserved Domains (2) summary
      cd00086
      Location:176238
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam07423
      Location:235324
      DUF1510; Protein of unknown function (DUF1510)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007131.6 Reference GRCz10 Primary Assembly

      Range
      52383618..52390295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005170214.3XP_005170271.1  

      Related
      ENSDARP00000119935, OTTDARP00000031579, ENSDART00000143668, OTTDART00000039480
      Conserved Domains (2) summary
      cd00086
      Location:149211
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam07423
      Location:208297
      DUF1510; Protein of unknown function (DUF1510)
    2. XM_009295014.2XP_009293289.1  

      Conserved Domains (2) summary
      cd00086
      Location:206268
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      pfam07423
      Location:265354
      DUF1510; Protein of unknown function (DUF1510)