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Nfat5 nuclear factor of activated T-cells 5, tonicity-responsive [ Rattus norvegicus (Norway rat) ]

Gene ID: 307820, updated on 8-Feb-2015
Official Symbol
Nfat5provided by RGD
Official Full Name
nuclear factor of activated T-cells 5, tonicity-responsiveprovided by RGD
Primary source
RGD:1309142
See related
Ensembl:ENSRNOG00000011879
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
Nfat; NF-AT5; TonEBP
Orthologs
See Nfat5 in MapViewer
Location:
19q12
Exon count:
16
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (38446059..38533735, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 19 NC_005118.3 (50363699..50398311) , (49320570..49403625, complement)

Chromosome 19 - NC_005118.4Genomic Context describing neighboring genes Neighboring gene NIN1/RPN12 binding protein 1 homolog (S. cerevisiae) Neighboring gene NAD(P)H dehydrogenase, quinone 1 Neighboring gene ribosomal protein S12-like Neighboring gene zinc finger protein 90

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
cytokine production IEA
Inferred from Electronic Annotation
more info
 
cytokine production ISO
Inferred from Sequence Orthology
more info
 
positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription from RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
regulation of calcineurin-NFAT signaling cascade IEA
Inferred from Electronic Annotation
more info
 
regulation of calcineurin-NFAT signaling cascade ISO
Inferred from Sequence Orthology
more info
 
response to osmotic stress IEP
Inferred from Expression Pattern
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
nuclear factor of activated T-cells 5
Names
nuclear factor of activated T-cells 5
T-cell transcription factor NFAT5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001107425.1NP_001100895.1  nuclear factor of activated T-cells 5

    See proteins identical to NP_001100895.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473972
    UniProtKB/Swiss-Prot
    D3ZGB1
    Conserved Domains (2) summary
    cd07882
    Location:297457
    RHD-n_TonEBP; N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP)
    cd01178
    Location:461560
    IPT_NFAT; IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005118.4 Reference Rnor_6.0 Primary Assembly

    Range
    38446059..38533735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003751872.3XP_003751920.1  

    Conserved Domains (2) summary
    cd07882
    Location:279439
    RHD-n_TonEBP; N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP)
    cd01178
    Location:443542
    IPT_NFAT; IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
  2. XM_008772503.1XP_008770725.1  

    Conserved Domains (2) summary
    cd07882
    Location:297457
    RHD-n_TonEBP; N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP)
    cd01178
    Location:461560
    IPT_NFAT; IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
  3. XM_006255555.2XP_006255617.1  

    See proteins identical to XP_006255617.1

    Conserved Domains (2) summary
    cd07882
    Location:73233
    RHD-n_TonEBP; N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP)
    cd01178
    Location:237336
    IPT_NFAT; IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
  4. XM_008772504.1XP_008770726.1  

    Conserved Domains (2) summary
    cd07882
    Location:225385
    RHD-n_TonEBP; N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP)
    cd01178
    Location:389488
    IPT_NFAT; IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
  5. XM_006255556.2XP_006255618.1  

    See proteins identical to XP_006255618.1

    Conserved Domains (2) summary
    cd07882
    Location:73233
    RHD-n_TonEBP; N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP)
    cd01178
    Location:237336
    IPT_NFAT; IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
  6. XM_006255554.2XP_006255616.1  

    See proteins identical to XP_006255616.1

    Conserved Domains (2) summary
    cd07882
    Location:73233
    RHD-n_TonEBP; N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP)
    cd01178
    Location:237336
    IPT_NFAT; IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
  7. XM_006255553.2XP_006255615.1  

    See proteins identical to XP_006255615.1

    Conserved Domains (2) summary
    cd07882
    Location:204364
    RHD-n_TonEBP; N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP)
    cd01178
    Location:368467
    IPT_NFAT; IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
  8. XM_008772505.1XP_008770727.1  

    See proteins identical to XP_008770727.1

    Conserved Domains (2) summary
    cd07882
    Location:73233
    RHD-n_TonEBP; N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP)
    cd01178
    Location:237336
    IPT_NFAT; IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.

Alternate Rn_Celera

Genomic

  1. AC_000087.1 Alternate Rn_Celera

    Range
    34621583..34708117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)