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    Trip13 thyroid hormone receptor interactor 13 [ Mus musculus (house mouse) ]

    Gene ID: 69716, updated on 5-Jul-2015
    Official Symbol
    Trip13provided by MGI
    Official Full Name
    thyroid hormone receptor interactor 13provided by MGI
    Primary source
    MGI:MGI:1916966
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D13Ertd328e; 2410002G23Rik
    Orthologs
    See Trip13 in Epigenomics, MapViewer
    Location:
    13 C1; 13 40.15 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 13 NC_000079.6 (73912462..73937767, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (74049910..74075215, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 30303 Neighboring gene predicted gene, 30432 Neighboring gene bromodomain containing 9 Neighboring gene predicted gene, 41002 Neighboring gene zinc finger, DHHC domain containing 11 Neighboring gene ribosomal protein S29 pseudogene

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (2)  1 citation
    • Targeted (2) 
    • Endonuclease-mediated (1) 
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    double-strand break repair IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    female meiosis I IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    male meiosis I IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    meiotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    oocyte maturation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    oogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    reciprocal meiotic recombination IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    spermatid development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    spermatogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    synaptonemal complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    male germ cell nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    pachytene checkpoint protein 2 homolog
    Names
    TR-interacting protein 13
    TRIP-13
    thyroid receptor-interacting protein 13

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027182.2NP_081458.1  pachytene checkpoint protein 2 homolog

      See identical proteins and their annotated locations for NP_081458.1

      Status: PROVISIONAL

      Source sequence(s)
      AK146877
      Consensus CDS
      CCDS26637.1
      UniProtKB/Swiss-Prot
      Q3UA06
      Conserved Domains (2) summary
      cd00009
      Location:175321
      AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
      smart00382
      Location:172322
      AAA; ATPases associated with a variety of cellular activities

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p3 C57BL/6J

      Range
      73912462..73937767
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_873456.1 RNA Sequence

    Alternate Mm_Celera

    Genomic

    1. AC_000035.1 Alternate Mm_Celera

      Range
      76242042..76267349
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)