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Bsn bassoon [ Mus musculus (house mouse) ]

Gene ID: 12217, updated on 8-Dec-2014
Official Symbol
Bsnprovided by MGI
Official Full Name
bassoonprovided by MGI
Primary source
MGI:MGI:1277955
See related
Ensembl:ENSMUSG00000032589; Vega:OTTMUSG00000016899
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Location:
9 F; 9 59.07 cM
Exon count:
13
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 9 NC_000075.6 (108096022..108191343, complement)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene microRNA 7088 Neighboring gene macrophage stimulating 1 (hepatocyte growth factor-like) Neighboring gene acylpeptide hydrolase Neighboring gene RIKEN cDNA 4930447F24 gene Neighboring gene dystroglycan 1 Neighboring gene nicolin 1

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
axon IDA
Inferred from Direct Assay
more info
PubMed 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
dendrite IDA
Inferred from Direct Assay
more info
PubMed 
excitatory synapse ISO
Inferred from Sequence Orthology
more info
 
extrinsic component of membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
NOT integral component of membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
neuron projection IEA
Inferred from Electronic Annotation
more info
 
neuron projection terminus IDA
Inferred from Direct Assay
more info
PubMed 
neuronal postsynaptic density IDA
Inferred from Direct Assay
more info
PubMed 
postsynaptic density IDA
Inferred from Direct Assay
more info
PubMed 
presynaptic active zone IDA
Inferred from Direct Assay
more info
PubMed 
presynaptic active zone ISO
Inferred from Sequence Orthology
more info
PubMed 
synapse IDA
Inferred from Direct Assay
more info
PubMed 
synapse ISO
Inferred from Sequence Orthology
more info
PubMed 
Preferred Names
protein bassoon
Names
protein bassoon
presynaptic cytomatrix protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007567.2NP_031593.2  protein bassoon

    See proteins identical to NP_031593.2

    Status: VALIDATED

    Source sequence(s)
    AC137678, AI836567, AK129141, AK135719, BY742476
    Consensus CDS
    CCDS23517.1
    UniProtKB/Swiss-Prot
    O88737
    UniProtKB/TrEMBL
    Q3UXD6
    Related
    ENSMUSP00000035208, OTTMUSP00000018359, ENSMUST00000035208, OTTMUST00000041006
    Conserved Domains (1) summary
    pfam05715
    Location:460520
    zf-piccolo; Piccolo Zn-finger

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000075.6 

    Range
    108096022..108191343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006511634.1XP_006511697.1  

    See proteins identical to XP_006511697.1

    UniProtKB/Swiss-Prot
    O88737
    Conserved Domains (1) summary
    pfam05715
    Location:460520
    zf-piccolo; Piccolo Zn-finger

Alternate Mm_Celera

Genomic

  1. AC_000031.1 

    Range
    107705791..107798925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)