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Fuom fucose mutarotase [ Mus musculus (house mouse) ]

Gene ID: 69064, updated on 19-Sep-2014
Official Symbol
Fuomprovided by MGI
Official Full Name
fucose mutarotaseprovided by MGI
Primary source
MGI:MGI:1916314
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fucu; Le51
See Fuom in Epigenomics, MapViewer
Location:
7 F4; 7
Exon count:
7
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 7 NC_000073.6 (140097815..140103152, complement)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene calcyon neuron-specific vesicular protein Neighboring gene proline-rich acidic protein 1 Neighboring gene enoyl Coenzyme A hydratase, short chain, 1, mitochondrial Neighboring gene polyamine oxidase (exo-N4-amino) Neighboring gene mitochondrial GTPase 1 homolog (S. cerevisiae) Neighboring gene shadow of prion protein

Markers

Homology

Clone Names

  • 1810014F10Rik

Gene Ontology Provided by MGI

Function Evidence Code Pubs
fucose binding IDA
Inferred from Direct Assay
more info
PubMed 
fucose binding ISA
Inferred from Sequence Alignment
more info
PubMed 
isomerase activity IEA
Inferred from Electronic Annotation
more info
 
monosaccharide binding IEA
Inferred from Electronic Annotation
more info
 
racemase and epimerase activity, acting on carbohydrates and derivatives IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
female mating behavior IMP
Inferred from Mutant Phenotype
more info
 
fucose metabolic process IDA
Inferred from Direct Assay
more info
PubMed 
fucosylation IMP
Inferred from Mutant Phenotype
more info
 
monosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 
negative regulation of neuron differentiation IMP
Inferred from Mutant Phenotype
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
Preferred Names
fucose mutarotase
Names
fucose mutarotase
protein fucU homolog
NP_001273146.1
NP_001273147.1
NP_081204.2

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286217.1NP_001273146.1  fucose mutarotase isoform 2

    See proteins identical to NP_001273146.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3'-terminal exon, compared to variant 1. The encoded isoform (2) has a longer and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AC109205, AK044731, CK618091
    UniProtKB/Swiss-Prot
    Q8R2K1
    Conserved Domains (1) summary
    cl00809
    Location:4133
    RbsD_FucU; RbsD / FucU transport protein family
  2. NM_001286218.1NP_001273147.1  fucose mutarotase isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon in the central coding region, which results in a frameshift and initiation from an alternate start codon, compared to variant 1. The encoded isoform (3) is shorter and has a distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AA403787, AC109205, AK044731
    UniProtKB/Swiss-Prot
    Q8R2K1
    Conserved Domains (1) summary
    cl00809
    Location:41139
    RbsD_FucU; RbsD / FucU transport protein family
  3. NM_026928.3NP_081204.2  fucose mutarotase isoform 1

    See proteins identical to NP_081204.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AC109205, AK044731, BC028662
    Consensus CDS
    CCDS40173.1
    UniProtKB/Swiss-Prot
    Q8R2K1
    Conserved Domains (1) summary
    cl00809
    Location:4146
    RbsD_FucU; RbsD / FucU transport protein family

RNA

  1. NR_104415.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site at an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC109205, AK044731

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000073.6 

    Range
    140097815..140103152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_389960.1 RNA Sequence

  2. XR_389961.1 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000029.1 

    Range
    139895878..139900504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)