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    Irx1 Iroquois related homeobox 1 (Drosophila) [ Mus musculus (house mouse) ]

    Gene ID: 16371, updated on 4-Jul-2015
    Official Symbol
    Irx1provided by MGI
    Official Full Name
    Iroquois related homeobox 1 (Drosophila)provided by MGI
    Primary source
    MGI:MGI:1197515
    See related
    Ensembl:ENSMUSG00000060969; Vega:OTTMUSG00000040082
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    See Irx1 in Epigenomics, MapViewer
    Location:
    13 C1; 13 38.43 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 13 NC_000079.6 (71958232..71963723, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (72095680..72101171, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102640882 Neighboring gene predicted gene, 40999 Neighboring gene predicted gene 4052 Neighboring gene ribosomal protein L9, pseudogene 4

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    iroquois-class homeodomain protein IRX-1
    Names
    homeodomain protein IRXA1
    iroquois homeobox protein 1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010573.2NP_034703.2  iroquois-class homeodomain protein IRX-1

      See identical proteins and their annotated locations for NP_034703.2

      Status: VALIDATED

      Source sequence(s)
      AK133937, AW491133, CO043226
      Consensus CDS
      CCDS26627.1
      UniProtKB/Swiss-Prot
      P81068
      Related
      ENSMUSP00000076562, OTTMUSP00000058240, ENSMUST00000077337, OTTMUST00000104122
      Conserved Domains (3) summary
      smart00548
      Location:309326
      IRO; Motif in Iroquois-class homeodomain proteins (only). Unknown function
      cd00086
      Location:135189
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      cl01319
      Location:188247
      HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p3 C57BL/6J

      Range
      71958232..71963723
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Mm_Celera

    Genomic

    1. AC_000035.1 Alternate Mm_Celera

      Range
      74285058..74290917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)