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    cldnk claudin k [ Danio rerio (zebrafish) ]

    Gene ID: 445070, updated on 27-Jun-2016
    Official Symbol
    cldnkprovided by ZNC
    Official Full Name
    claudin kprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040801-201
    See related
    Ensembl:ENSDARG00000042357 Vega:OTTDARG00000021912
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:91878
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    105 current GRCz10 (GCF_000002035.5) 3 NC_007114.6 (49088239..49092921, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (47638300..47641978)

    Chromosome 3 - NC_007114.6Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L12 Neighboring gene zgc:103625 Neighboring gene hepatocyte growth factor-regulated tyrosine kinase substrate Neighboring gene bloodthirsty-related gene family, member 2 Neighboring gene si:dkey-120c6.5

    • Cell adhesion molecules (CAMs), organism-specific biosystem (from KEGG)
      Cell adhesion molecules (CAMs), organism-specific biosystemCell adhesion molecules are (glyco)proteins expressed on the cell surface and play a critical role in a wide array of biologic processes that include hemostasis, the immune response, inflammation, em...
    • Cell adhesion molecules (CAMs), conserved biosystem (from KEGG)
      Cell adhesion molecules (CAMs), conserved biosystemCell adhesion molecules are (glyco)proteins expressed on the cell surface and play a critical role in a wide array of biologic processes that include hemostasis, the immune response, inflammation, em...
    • Tight junction, organism-specific biosystem (from KEGG)
      Tight junction, organism-specific biosystemEpithelial tight junctions (TJs) are composed of at least three types of transmembrane protein -occludin, claudin and junctional adhesion molecules (JAMs)- and a cytoplasmic 'plaque' consisting of ma...
    • Tight junction, conserved biosystem (from KEGG)
      Tight junction, conserved biosystemEpithelial tight junctions (TJs) are composed of at least three types of transmembrane protein -occludin, claudin and junctional adhesion molecules (JAMs)- and a cytoplasmic 'plaque' consisting of ma...

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
     
    cell junction IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003464.1NP_001003464.1  claudin k

      See identical proteins and their annotated locations for NP_001003464.1

      Status: PROVISIONAL

      Source sequence(s)
      BC078365
      UniProtKB/TrEMBL
      Q6DBT9
      Related
      ENSDARP00000062115, OTTDARP00000022964, ENSDART00000062116, OTTDART00000028060
      Conserved Domains (1) summary
      cl21598
      Location:4181
      Claudin_2; PMP-22/EMP/MP20/Claudin tight junction

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007114.6 Reference GRCz10 Primary Assembly

      Range
      49088239..49092921 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009299746.1XP_009298021.1  

      See identical proteins and their annotated locations for XP_009298021.1

      UniProtKB/TrEMBL
      Q6DBT9
      Conserved Domains (1) summary
      cl21598
      Location:4181
      Claudin_2; PMP-22/EMP/MP20/Claudin tight junction