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    NFC5 nucleosome/chromatin assembly factor group C5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829094, updated on 15-Aug-2016
    Gene symbol
    NFC5
    Gene description
    nucleosome/chromatin assembly factor group C5
    Primary source
    TAIR:AT4G29730
    Locus tag
    AT4G29730
    Gene type
    protein coding
    RNA name
    nucleosome/chromatin assembly factor group C5
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSI5; NFC5; nucleosome/chromatin assembly factor group C5; T16L4.240; T16L4_240
    Summary
    cell cycle-related repressor genes encoding WD-repeat proteins.
    See NFC5 in Map Viewer
    Location:
    chromosome: 4
    Exon count:
    15
    Sequence:
    Chromosome: 4; NC_003075.7 (14558985..14562538, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Alkaline-phosphatase-like family protein Neighboring gene polyamine oxidase 5 Neighboring gene hypothetical protein Neighboring gene cytokinin dehydrogenase 4

    Products Interactant Other Gene Complex Source Pubs Description
    NM_119118.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    covalent chromatin modification IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Cul4-RING E3 ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISM
    Inferred from Sequence Model
    more info
     
    Names
    nucleosome/chromatin assembly factor group C5
    NP_194702.2
    • nucleosome/chromatin assembly factor group C5 (NFC5); CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G19520.1); Has 24856 Blast hits to 17343 proteins in 647 species: Archae - 12; Bacteria - 3162; Metazoa - 9403; Fungi - 5971; Plants - 3158; Viruses - 0; Other Eukaryotes - 3150 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14558985..14562538 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119118.2NP_194702.2  nucleosome/chromatin assembly factor group C5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194702.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SU78
      Conserved Domains (4) summary
      COG2319
      Location:133459
      WD40; WD40 repeat [General function prediction only]
      pfam12265
      Location:56120
      CAF1C_H4-bd; Histone-binding protein RBBP4 or subunit C of CAF1 complex
      sd00039
      Location:148197
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:143395
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...